-
Hi, @andrewsong90, @ajv012
It is a impressive work!
I would like to request access to the pre-extracted patch embeddings and gene expression data for all TCGA cohorts. I understand that the siz…
-
Thank you for this tool.
I am a novice in all TCGA data, but I am looking to do some analysis, and I wanted to download TPM normalised values, so that I can compine my own RNA-seq data. I think for m…
-
Dear authors,
Thank you for sharing the WSI-VQA dataset and code. I have a question regarding the dataset usage.
In TCGA, each case may have multiple WSIs (whole slide images), but in the dataset'…
-
Thanks for the amazing work!
I have a question regarding the image slides. For each patient, there can be more than one slide. For example, TCGA-5T-A9QA case has both the TCGA-5T-A9QA-01A-01-TSA an…
-
Please generate a list of resources/sources we will be getting data from as a table that will be maintained by you with structure (fields) given below:
key, name, description
tcga, TCGA, some des…
-
Hi, thanks for this impressive work on this project!
I have a question regarding the use of the Gigapath model to generate embeddings for the task of TCGA LUAD 5 genes mutation prediction. I notic…
-
Hello,
Is there a chance you have access to the complete version of the 'ref.csv' file with normalised gene expression values for all patients in TCGA-BRCA project?
Or do you know how to build thi…
-
For TCGA Google Big Data Query check
- [x] What are the requirements for accessing Google Big Data Query?
- [x] What is the pricing for accessing Google Big Data Query Check for Big Data Query?
-…
-
Hello,
I am going through the steps and I finally processed the H&E images (breast cancer) of my data into a graph object, following the preprocessing step. now I need to predict survival but the g…
-
@inodb @dippindots i'm still convinced that we should just be aggressively sampling here, that in the context of the study view it's the general curve and that user doesn't need to able to mousover an…