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I'm trying to use the latest image and singularity to run EDTA, it looks like EDTA can't find genometools, but I see it's installed on container. relevant info below:
```{bash}
[16:40:42] david.mo…
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Hi,
Are the .gtf and the prebuilt_indices are somehow related ?
I download both and I got different annotations:
https://labshare.cshl.edu/shares/mhammelllab/www-data/TEtranscripts/TE_GTF/T2T…
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Writing genome FASTA file into reference folder...
...done
Indexing genome FASTA file...
...done
Writing genes GTF file into reference folder...
...done
mkref has failed: error building re…
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Hello,
I have a hybrid plant genome with two haplotypes (Hap#1=1.6Gb with 22 chromosomes and Hap#2=1.8Gb with 24 chromosomes). I wanted to mask the genome, but RepeatMasker seems to be stalling in…
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### Actual behavior
```
Segmentation fault (core dumped)
```
### Steps to reproduce
```
import tvm
from tvm import relax
import numpy as np
from tvm.script import ir as I
from tvm.sc…
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Hi, I am using this the --make_annotaion preprocessing to run a multiple samples TE detecting,but after I ran out the --make_annotation,then I use -1 -2 to add sample,and find a repeat annotation step…
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Hello,
Thank you for sharing this great tool for us to explore transposon in NGS data. Currently, I am using it to investigate TE in human RNAseq data. I enter a problem in the combine_hit…
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I have been using TEcount for estimating TEs in total RNA-seq data which has worked great. However, I want to combine this with methylation data and there we have methylation differences at the transc…
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It would be very (actually: very, very) useful to be able to define sequences of (consecutive or not) tokens and attach annotations/attributes to them.
This would would require a new entity "token …
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Met een snelle blik op NEN 2660-2 (check @RiX012), lijkt me dit een OOP weergave in je localStorage/in-mem van wat een instantie van een `nen2660:PhysicalObject` zou zijn,
Het is in TypeScript vanw…