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The output file FIltered_genefam_dataset.csv should be output as a tsv rather than a csv because the fields could have comma's within a field.
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Hello,
As you already mentioned in your description, the database becomes very large. To keep the database smaller, it would be nice to be able to select which TSV files should be imported. In my c…
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For the munge -C colheaders.tsv option, what is the format of the colheaders.tsv file? The -c options does not include ourput from GENESIS (https://github.com/UW-GAC/GENESIS).
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Hi
Thanks for your work in DiaNN. I used Diann1.8.1 in linux system and have a few questions about '--qvalue' and '--matrix-qvalue' .
With the same DIA data, spectral library and other params, I …
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The pipeline comprise in 3 steps with example scripts in src/ormir_mids/bin
1. **dicomdir.py**: the datasets are stored in the DICOMDIR structure by separating the different dicom series . Further…
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I'm just wondering, what is the Orthogroup column in `N*.tsv` mean? I think the distinct orthogroups should be the HOGs, but sometimes I see that different rows will have the same Orthogroup ID, and I…
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Add the alignment strand to the alignments.tsv and summary.tsv
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1. allow CSV in addition to TSV
2. allow files to be named something other than `OTU_table.tsv, Taxonomy.tsv, Samples.tsv, and (optionally) Study.tsv` and have a feature to allow the user to map them…
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Hi BASALT Team,
Thanks for creating such a great tool! I have been trying out this program on 9 different samples and have been running BASALT individually for each set of assemblies on my HPC clus…
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**Describe the bug**
Hello,
I have a weird variant TSV output when I provide the _gff_ file with a reference with multiple contigs. More or less each variant is duplicate/triplicate with the same va…