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## Overview
In #158, `review.tsv` was added to the list of artefacts. We should utilize it.
## How to utilize
- [ ] #170
- Perhaps this is sufficient for utilization.
Copy/paste: review.tsv…
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**Literature TSV download is empty**
Hello,
I am trying to download the list of all literature publications citing the 'Geneva Herbarium - General Collection (G)' dataset (https://www.gbif.org/data…
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Sorry to bother you. The output file '.vregion.annot.tsv' only saved results from one replicon. It's not what you want, isn't it? It seems you made mistake in line517:
`df3 = df2.loc[df2['replicon'] …
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An addition to the .tsv scrambler could be to look into how much leakage there is in a scrambled dataset.
Simple metrics could be full row leakage & partial row leakage with the option to set a …
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Hi Thank you for developing this useful tool!
I would like to inquire about the differences between transcript_tpm.tsv and transcript_model_tpm.tsv.
The file transcript_model_tpm.tsv contains the …
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## Overview
In the Disease-Gene pipeline, we have had some cases where the MIM marked as a phenotype for a given association did not actually have a phenotype as its MIM type.
In 2024/10, OMIM fix…
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Thank to your help, I succeded to complete the intogen pipeline on my samples.
But I encounterd a small issue that might affect the final output.
The "cohort.tsv" file shows
COHORT CANCER_TYPE PLA…
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As of 1.2, [`read_tsv`](https://github.com/openwdl/wdl/blob/wdl-1.2/SPEC.md#read_tsv) has the following overloads as covered by the "variants" section in the function's description:
* `Array[Array[…
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Hi, thanks for this amazing tool.
I ran successfully the pipeline but the Similarity search, processed files
* _gene_ontology_terms.tsv
are all empty. What am I doing wrong? I would lik…
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Hi,
Sorry for opening this thread here, I know it's not directly related to the tool, but I hope you can help me out.
I’m trying to download assembled metagenomes from the HMP database. The issu…