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### Description of feature
As mentioned here,
https://github.com/nf-core/sarek/pull/831#issuecomment-1313457016
the subway-map of the variant-callers seem to indicate that the variant-callers…
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Hi there,
I'm looking for a good method to combine calls produced by short variant callers (50bp). Most structural variant merging tools are designed to merge SVs from different SV callers, and SNP…
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Strelka2 (Illumina) seems to be a promising alternative to varscan2.
Mentioned in bcbio bcbio-nextgen issue 2345.
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Small variant callers with LRs are being pushed out/updated, so we need to keep track of major updates and new comers
List of interesting ones
New
- [ ] [dipcall](https://github.com/lh3/dipcall…
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While debugging a user issue (see [thread](https://groups.google.com/d/msg/google-genomics-discuss/r4_Kt2MITng/zEd723xdCwAJ)), we came across non-standard fields from VarScan2 (e.g. the "AD" field is …
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Dragen 4.2 now offers a high-sensitivity mode:
https://developer.illumina.com/news-updates/dragen-4-2-enhanced-machine-learning-new-targeted-callers-and-more
- [ ] test it
- [ ] test if the variants …
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Lets **have two sets of indel metrics**
- one for short
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Hi,
I was wondering if you might be able to explain some very high QUAL scores in my VCFs?
I am calling variants from recent, high-quality bacterial (i.e., haploid) nanopore data.
This is the…
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I have enjoyed using Clair3 (clair3-arm64) for examining natural variants at the whole-genome level. However, I've recently noticed some irregularities that likely need correction.
Specifically, I …
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The [calling docs](https://varlociraptor.github.io/docs/calling/)
> In particular, you can also first combine candidates from different callers, to cover diverse variant types and length ranges
T…