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https://vcftools.github.io/
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### Description of the bug
Joint germline genotyping completes actual genotyping, but fails at TSV count vcftools step
### Command used and terminal output
Command:
nextflow run nf-core/…
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Hi, @millanek
Can Dinvestigate sliding window by length (such as vcftools, 25kb window, 10kb step)?
Zhigui Bao
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I am trying to impute using BEAGLE, but one of the first steps that I am aiming for is assembling a reference panel to guide imputation. We are planning to use a subset of genotyped individuals select…
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Buen día.
Tengo problemas para instalar vcftools en mi computadora. Bajo el programa y cuando quiero descomprimir con `unzip`o `tar` me dice que no lo puede descomprimir.
Hice lo siguiente:
`git c…
BarCS updated
4 years ago
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I've tried to debug the vcftools recipe locally on my osx-arm64 laptop.
I installed bioconda-utils, checkout out to the branch of bioconda-recipes and ran:
```
bioconda-utils build --docker --m…
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It seems like the tools in the vcftools collection require both bgzip and tabix (see e.g. https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/vcftools/vcftools_subset/vcftools_…
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Hi!
I'm trying to do a per-site Fst calculation with two populations.
I'm running the following command lines :
VCF="/home/ndwivedi/work/structure_filter/scaffolds/${scaffold}.vcf.gz"
vcfto…
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Hi I have failed docker building process.
Step 11/35 : RUN cd /tmp && wget https://kent.dl.sourceforge.net/project/vcftools/vcftools_0.1.13.tar.gz && tar xvfz vcftools_0.1.13.tar.gz && cd vcfto…
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Once vcztools has been [released](https://github.com/sgkit-dev/vcztools/issues/43) we should deprecate sgkit's `write_vcf` and `zarr_to_vcf` [functions for writing VCF](https://sgkit-dev.github.io/sgk…