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Hi, I've been trying to run VirSorter now and troubleshooting some, but I can't figure out why I'm not getting my viral sequences in my output. When I look in logs/err it's empty, the logs/out looks l…
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Hi. I attemps to identify the viral entities from a group of the bacterial and archaeal genomes deposited in GTDB.
Identification of viral sequences from GTDB using Genomad exhibited lots of viral …
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Hello,
Can you provide the viral sequences that you recovered in this article? Thanks in advance!
Best,
Zhongyi
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Hi,
I have used VirSorter2 to identify the viral genomes from the metagenome assemblies successfully. The command I have used was "virsorter run --prep-for-dramv -w DRTY10_201912_sfd_ge10kbp.out_v2 -…
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Hello, I am attempting to utilize virusbreakend and have been running into an issue I have been unable to solve. Whenever I attempt to run the shell script I am returned with the following error: Thu …
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Hey, thanks for this nice pipeline!
I'm running the pipeline with the `--list` argument providing a sample sheet to it to run on ~100 samples. But for all the viral sequences that are identified b…
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Hi, I tried using DVF to identify viral sequences from my metagenomic dataset, but how do I extract the identified sequences? There is only a txt file in the output file.
Thanks a lot
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## Report files from updating genbank databases
https://farm.cse.ucdavis.edu/~baumlerc/report.20240712-archaea.html
https://farm.cse.ucdavis.edu/~baumlerc/report.20240712-fungi.html
https://farm.…
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Greetings,
I was testing your pipeline on the HPC center at our facility, and I keep getting errors with CheckV:
```
[2024-02-21 07:40:18] | Pre-check inputings. In processing...
[2024-02-21 07:…
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Hello everyone,
I building GTDB databases to be used along with Kraken2. I was wondering if it was possible to add viral refseq sequences while building kraken2 databases? GTDB consists of archaeal a…