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Hi Team,
We are interested to use the li_hiv package for our dataset. I see that "In this example we used K03455 as the virus genome", but we want to use many other genomes. Should I download other g…
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Match [GDC](https://gdc.cancer.gov/about-data/gdc-data-processing/gdc-reference-files)
- include decoys
- include viruses
Will need to
- [x] recreate reference files for all human (h38/hg19) ge…
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Hi, the software seems very good, but I am new in metagenome analysis and I have questions about the selection of appropriate reference genomes (indexes) when using 'hostile'.
1.
I read the "Refe…
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Hi I am getting the following error:
sample1.fastq.gz is either empty or contains multiple entries with the same identifier. Please check your input FASTA file and execute genomad annotate again. …
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Hi,
I'm very much interested in using the HumGut database, but I have a few questions about the taxonomy files.
1) I wanted to include the Kraken DB for viruses and fungi to explore these other…
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Hi!
Thanks for the excellent tool phanta.
I have run phanta (following raw reads quality control and host contamination removal) for my samples (human fecal samples, Illuminia 150bp paired-end r…
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Hello,
I am having issues in creating a custom database and need some help in resolving the issue.
I found ``` https://github.com/DiltheyLab/MetaMaps/issues/5``` to be helpful and following that …
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Hi, I am trying to reanalyze the data, but I am confused about the data in tableS3. Thank you !
**Q1:** Why are the results in Table S1 and Table S3 so different? Did you do additional filtering for …
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Thanks for your wonderful tools!
I have a collection of viral genomes (~6000 strain genomes, length=10000 bp per genome) and I am using vg to build a vg graph with these genomes. I have used tw…
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## Summary
Add more genome lists in the [genomes] directory for other species of viruses.
## More Info
### Context
Similar to #23, we need the ability to use YAVSAP on other viral species.…