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The visium_hd function from spatialdata-io is currently returning an error importing the images from spaceranger output.
This is the error I am running into
```
File /data/williamsd7/cond…
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Hello, I am attempting to follow the 10x Visium example notebook (https://spatialdata.scverse.org/en/latest/tutorials/notebooks/notebooks/examples/technology_visium.html#technology-focus-10x-genomics-…
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Hello SCIMAP developers,
I wanted to know if it is possible to use either MERFISH or Visium data with this tool, and how would one go about doing so. Because, I keep encountering an error with rega…
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Thanks for the wonderful tool.
Would there be a plan to support Visium HD anytime soon?
Thanks!
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Hi, I get an error when trying to read in a Visium HD dataset with the visium_hd reader of v0.1.5. The same code works perfectly fine with v0.1.4.
```
from spatialdata_io import visium_hd
sdata …
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I received the following warning when using the transfer data function for Xenium to Visium transfer, but was able to properly use vrSpatialFeaturePlot. What does this mean?
In vrCoordinates.vrAssay…
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https://github.com/scverse/spatialdata-io/blame/bc17abc065c39e07d6b17affaf2c4b95adbaafea/src/spatialdata_io/readers/visium_hd.py#L357
Currently `visium_hd` function can't handle empty file prefixes…
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### Ask away!
The pipeline has run successfully using `--kit 'visium:v1'` with `2.2.0` The output generated are as follows
```
config_stats.json
gene.expression.mito-per-cell.tsv
gene.expressi…
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Thanks for the wonderful tool
I was wondering whether it would be possible to load visium HD data with the current version
and go on to the downstream analysis
if not, would there be any plan …
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Dear Seurat team,
I am using Seurat v5.1.0 to analyze HD Visium data, which consists of two biological replicates from a spinal cord sample. We hope to combine/integrate the two datasets and …