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hi, thanks for this powerful tool！
I did some analyses and have some questions about the interpretation of the results.
Is the discussion of within-cell type heterogeneity premised on that the c…
AI-10 updated
3 weeks ago
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1. Run [tutorial](https://stuartlab.org/signac/articles/pbmc_vignette) on scATAC-seq and scRNA-seq integration
2. Run similar workflow using Fetal Developmental Atlas data
2.1 Make sure we have…
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**Background**:
Researchers often seek to integrate their findings from different techniques, and by utilizing single-cell data, an extra layer of knowledge can be added to the analysis of cancer ge…
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Hi Christoph,
Thanks for all your work.
I wanted to get your thoughts on a potential issue of per batch sctransform that I haven't seen described elsewhere.
There has been lots of debate ove…
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
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**A reproducible template workflow for single-cell DNA methylation data**
DNA methylation is a heritable epigenetic mark that shows a strong correlation with transcriptional activity, and may be de…
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Please provide your opinion on the reproducibility of fusion genes detected when analyzed using Arriba. I conducted two types of analyses: 1. A case where the same template was used to create a librar…
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Hi!
I was wondering if there is option to use this for differential state analysis (differential expressiona analysis between stim vs ctrl) in a certain cell subset like B cells. So differential e…
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Initial group info you provided:
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| Name | Department/Program | Expertise/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Samantha Sch…
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Hi,
In the paper (SpatialDWLS: accurate deconvolution of spatial transcriptomic data), in figure 2C there was a bar plot of the different composition of deconvoluted cell types generated - this gr…