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Hello, I like very well AutoHiC with 3d-dna, but I want to improve your assembly pipeline using YAHS but I have some problems.
I already try to run onehic with peanut example to test the pipeline …
pdru updated
11 hours ago
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I have alignments from juicer, and I would like to use them with Yahs.
I woudl like to know your opinion regarding
1.- Using the juicer mapping output for Yahs
2.- Is it better to use the sam f…
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Hello!
I have encountered an error while running nucmer (most recent version) recently:
Here is the command used:
`nucmer -t 20 -p nucmer.hifiasm_hic_hap2_scaffolds_final_to_hifiasm_hic_hap1_sc…
fka21 updated
3 weeks ago
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**Which tool should be included?**
https://github.com/c-zhou/yahs
https://www.biorxiv.org/content/10.1101/2022.06.09.495093v1
**How is it used?**
```
yahs contigs.fa hic-to-contigs.bam
```
…
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Hi,
It would be interesting to see a comparison between these two.
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Hi all,
I am assembling a genome for a bird (estimated genome size 1.15 Gbp). I already have a VGP-quality assembly I generated combining HiFi and HiC (assembly and phasing with Hifiasm, scaffoldin…
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Dear YaHS Developers and Users,
For large genomes, the .assembly and .hic files generated by YaHS are not fully compatible with Juicebox. Manually setting the scale factor in Juicebox may be necess…
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Hi Nadolina!
Thanks for setting up the steps for dual curation. I am wondering if I should scaffold the haplotipic assemblies with YAHS separately before concatenating and dual curating them on Prete…
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Hi,
I had installed the suite in three linux machines using miniconda3. The PretexMap work well without any problem, but the PretextSnapshot gives this error in each server:
barta@summit:/molb…
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Hi,
I am wondering whether would be advisable to do more than one round of yahs analysis. Meaning:
Round one: mapping hic reads to draft.fa --> hic.bam + yahs --> manual curation with Juicebox -…