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Adamtaranto
/
frisk
Screen genomic scaffolds for regions of unusual k-mer composition.
http://adamtaranto.github.io/frisk/
GNU General Public License v3.0
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Initial CRE KLI calculation including CLI
#43
kdm9
closed
7 years ago
5
DEVELOP
#42
kdm9
opened
7 years ago
0
IVOM/KLI debugging
#41
kdm9
opened
8 years ago
3
Add Chrm Painting for HMM states
#40
Adamtaranto
opened
8 years ago
0
Chrm painting for RIP track
#39
Adamtaranto
closed
8 years ago
1
pybedtools is temperamental AF - Preprocess host GFF annotations
#38
Adamtaranto
opened
8 years ago
0
Remove redundant columns from k-mer sym-prop matrix
#37
Adamtaranto
opened
8 years ago
0
Finding optimal K
#36
Adamtaranto
opened
8 years ago
0
Gff reports
#35
Adamtaranto
closed
8 years ago
0
fix formatting and labeling for clustered anom PCA graphics
#34
Adamtaranto
closed
8 years ago
0
Gff reports
#33
Adamtaranto
closed
8 years ago
0
Add new SKL dim reduction methods
#32
Adamtaranto
closed
8 years ago
0
Pandasize
#31
Adamtaranto
closed
8 years ago
0
Migrate t-SNE to Sci-Kit-Learn Implementation
#30
Adamtaranto
closed
8 years ago
1
Known bug: Matplotlib axes.prop_cycler warning
#29
Adamtaranto
closed
8 years ago
0
Version tag unknown
#28
Adamtaranto
closed
8 years ago
2
Xantho test result
#27
kdm9
closed
8 years ago
1
Add a Gitter chat badge to README.md
#26
gitter-badger
closed
8 years ago
0
k-means as alt clustering method
#25
Adamtaranto
closed
8 years ago
1
Add Self-genome Masking
#24
Adamtaranto
closed
8 years ago
1
Option: Limit scaffolds to be included in chromosome painting
#23
Adamtaranto
closed
8 years ago
1
Add report - Self + Anom GC content as stacked
#22
Adamtaranto
closed
8 years ago
1
Add Jensen-Shannon Distance as an alternative Distance measure.
#21
Adamtaranto
opened
8 years ago
1
Driving Kmer reports
#20
Adamtaranto
opened
8 years ago
1
Include Class label in GFF output
#19
Adamtaranto
closed
8 years ago
1
Chromosome painting of Anomalies fails when Chr name is Number
#18
Adamtaranto
closed
8 years ago
1
Cythonise IVOM & K-mer hashing
#17
kdm9
closed
7 years ago
3
Pybedtools update fucks float to BED conversion.
#16
Adamtaranto
closed
8 years ago
3
Clean docs directory
#15
kdm9
closed
8 years ago
1
PEP440 pypi error
#14
Adamtaranto
closed
8 years ago
3
Use versioned dependency on scipy stack
#13
kdm9
closed
8 years ago
1
pip installed frisk fails to run on mac
#12
Adamtaranto
closed
8 years ago
6
Sphinx build for gh-pages and RTFD
#11
Adamtaranto
closed
8 years ago
0
Fix prog name in argparsing to frisk
#10
Adamtaranto
closed
8 years ago
0
pep8
#9
Adamtaranto
closed
8 years ago
0
Frisk module
#8
kdm9
closed
8 years ago
0
Versioneer setup py redux
#7
kdm9
closed
8 years ago
0
Documentation
#6
Adamtaranto
closed
8 years ago
5
Debian package
#5
kdm9
closed
7 years ago
0
Versioneer?
#4
kdm9
closed
8 years ago
3
Versioneer fail
#3
Adamtaranto
closed
8 years ago
1
Licensing: GPLv3?
#2
kdm9
closed
8 years ago
3
git cleanup
#1
kdm9
closed
9 years ago
0