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AfshinLab
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BLR
MIT License
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Integrate TELL-seq
#34
pontushojer
closed
4 years ago
2
Adding conda.pack package for offline run (Bianca)
#33
HSiga
closed
4 years ago
2
update concat_molecule_stats
#32
HSiga
closed
4 years ago
2
Add N50 phaseblock to general stats table.
#31
pontushojer
closed
4 years ago
1
Synchronise merges
#30
pontushojer
closed
4 years ago
2
Add genome coverage analysis to pipe
#29
pontushojer
closed
4 years ago
4
Update blr run command
#28
pontushojer
closed
4 years ago
0
Update blr-testdata to v0.5
#27
pontushojer
closed
4 years ago
2
Change flag for collecting unmapped reads.
#26
pontushojer
closed
4 years ago
1
Pipe chunks directly into tagbam
#25
pontushojer
closed
4 years ago
2
Add window_size as parameter in configs
#24
pontushojer
closed
4 years ago
1
Synchronise barcode filtration across chunks.
#23
pontushojer
closed
4 years ago
6
Add version number to blr log files and to SAM headers.
#22
pontushojer
closed
4 years ago
0
Some clusterrmdup refactoring
#21
marcelm
closed
4 years ago
6
Make samtools sort write intermediate files to temporary directory.
#20
pontushojer
closed
4 years ago
2
Manage the version number with setuptools_scm
#19
marcelm
closed
4 years ago
1
Disable tqdm if directing stderr to file.
#18
pontushojer
closed
4 years ago
0
MultiQC plugin
#17
pontushojer
closed
4 years ago
3
Parallelize by chromosome
#16
marcelm
closed
4 years ago
13
Compute phasing stats even when we call our own variants
#15
marcelm
closed
4 years ago
1
Fix two crashes when stats are empty
#14
marcelm
closed
4 years ago
1
Switch to using a multi-chromosome test dataset
#13
marcelm
closed
4 years ago
2
Speed up tests
#12
marcelm
closed
4 years ago
1
Fix memory-issue in `buildmolecules.py`
#11
pontushojer
closed
4 years ago
5
Start making test data generation reproducible
#10
marcelm
closed
4 years ago
1
Use more wildcards
#9
marcelm
closed
4 years ago
2
Do not hard-code the molecule stats file name
#8
marcelm
closed
4 years ago
4
Split out "blr tagbam" into separate rule
#7
marcelm
closed
4 years ago
1
Integrate stLFR type reads
#6
pontushojer
closed
4 years ago
1
Fix GitHub actions on macOS
#5
marcelm
closed
4 years ago
1
Phasebam updated
#4
pontushojer
closed
4 years ago
4
Phasebam
#3
FrickTobias
closed
4 years ago
5
Switch to GitHub actions
#2
marcelm
closed
4 years ago
3
Update duplicate marking and handling
#1
pontushojer
closed
4 years ago
9
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