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AlexsLemonade
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OpenScPCA-analysis
An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal
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Anchor transfer (with Seurat) for Wilms tumor annotation (SCPCP000014)
#784
JingxuanChen7
opened
2 days ago
0
Initiation of new Glioblastoma analysis module
#783
georginaalbadri
opened
3 days ago
1
Anchor transfer for Wilms tumor annotation (SCPCP000014)
#782
JingxuanChen7
opened
3 days ago
2
Do not print messages about syncs completing when using --dryrun
#780
jaclyn-taroni
closed
5 days ago
0
Add function for cluster stability
#779
sjspielman
closed
4 days ago
3
Initiation of SCPCP000001
#778
georginaalbadri
opened
6 days ago
5
Add silhouette and purity functions
#777
sjspielman
closed
6 days ago
0
04_annotation_Across_Samples_exploration
#776
maud-p
opened
6 days ago
6
rOpenScPCA: plan notebook for cluster evaluation
#775
sjspielman
opened
6 days ago
1
Annotation (label transfer) exploration for SCPCP000006
#774
maud-p
opened
6 days ago
0
rOpenScPCA: function to calculate stability
#773
sjspielman
closed
4 days ago
2
rOpenScPCA: function to calculate neighborhood purity
#772
sjspielman
closed
6 days ago
1
rOpenScPCA: function to calculate silhouette width
#771
sjspielman
closed
6 days ago
1
Update rOpenScPCA gha
#770
sjspielman
closed
1 week ago
0
Merge main into feature/ropenscpca
#769
sjspielman
closed
1 week ago
0
Syncing main into feature/ropenscpca
#768
sjspielman
closed
1 week ago
2
Celltype annotation for non-ETP T-ALL (SCPCP000003)
#767
UTSouthwesternDSSR
closed
2 days ago
9
initial commit
#766
danhtruong
closed
1 week ago
1
Add function to sweep clustering parameters
#765
sjspielman
closed
1 week ago
6
Start an analysis for Wilms tumor annotation (SCPCP000014)
#764
JingxuanChen7
closed
1 week ago
4
Update sync-results.py printing
#763
sjspielman
closed
1 week ago
0
Monthly spellcheck results
#762
github-actions[bot]
closed
1 week ago
1
Celltype annotation for non-ETP ALL (SCPCP000003)
#761
UTSouthwesternDSSR
opened
2 weeks ago
0
initial commit
#760
danhtruong
closed
2 weeks ago
0
Extract PC matrix within clustering function (2/2)
#759
sjspielman
closed
1 week ago
3
Add function to extract PC matrix (1/2)
#758
sjspielman
closed
2 weeks ago
2
Start an analysis for Wilms tumor annotation (SCPCP000014)
#757
JingxuanChen7
closed
1 week ago
1
rOpenScpCA: Add function to sweep clustering parameters
#755
sjspielman
closed
1 week ago
6
rOpenScpCA: Add function to extract PCA matrix
#754
sjspielman
closed
1 week ago
2
Merge main into ropenscpca
#753
jashapiro
closed
2 weeks ago
0
Merge main into ropenscpca
#752
jashapiro
closed
2 weeks ago
1
Add download option to sync script
#751
jashapiro
closed
2 weeks ago
1
Wilms tumor 06- clustering exploration
#750
maud-p
closed
1 week ago
12
Add function to perform graph-based clustering
#749
sjspielman
closed
2 weeks ago
6
Make GHA trigger & Dockerfiles consistent
#748
jashapiro
closed
3 weeks ago
0
Update documentation to remove `defaults` channel and suggest miniforge
#747
jashapiro
closed
3 weeks ago
1
Propagate miniforge Docker changes
#746
jashapiro
closed
3 weeks ago
1
Add rOpenScPCA function to perform graph-based clustering
#745
sjspielman
closed
2 weeks ago
3
Test fix for docker actions failing after miniforge
#744
jashapiro
closed
3 weeks ago
2
Analysis module failing in CI
#743
github-actions[bot]
closed
3 weeks ago
2
Analysis module failing in CI
#742
github-actions[bot]
closed
3 weeks ago
3
Create a release: 2024-09-01
#741
github-actions[bot]
closed
3 weeks ago
3
Update docker images and GHA to use miniforge
#740
jashapiro
closed
1 month ago
0
Add README for github workflows directory
#739
sjspielman
closed
1 month ago
1
Add README to the workflows directory
#738
sjspielman
closed
1 month ago
0
02 run azimuth before kweight
#737
maud-p
closed
4 weeks ago
4
Fix linking to use relative links
#736
jashapiro
closed
1 month ago
0
Initiate ropenspca package
#735
sjspielman
closed
1 month ago
3
Run Docker build and push on a larger runner
#734
jaclyn-taroni
closed
1 month ago
0
Improve handling of symlinks within Docker containers
#733
jashapiro
closed
1 month ago
0
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