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AlexsLemonade
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scpca-docs
User information about ScPCA processing
https://scpca.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Add `bulk_metadata.tsv` file to download section for bulk data
#55
allyhawkins
closed
2 years ago
0
Add information about hard UMI cutoff for filtering
#54
allyhawkins
closed
2 years ago
1
Add note about using hard cutoff for filtering in docs
#53
allyhawkins
closed
2 years ago
0
Create a "Getting started with an ScPCA dataset" section
#52
jaclyn-taroni
closed
2 years ago
2
Add notes on rounding
#51
jashapiro
closed
2 years ago
0
Add note that all count matrices are rounded to integers
#50
jashapiro
closed
2 years ago
0
Add spatial transcriptomics files to downloads section
#49
allyhawkins
closed
2 years ago
0
Is there a way to get rid of the ads on the side bar?
#48
dvenprasad
opened
2 years ago
1
Add documentation on processing spatial transcriptomics libraries
#47
allyhawkins
closed
2 years ago
0
Update processing and filtering information in docs to reflect scpca-nf release 0.1.3
#46
allyhawkins
closed
2 years ago
1
Update processing & filtering discussion
#45
jashapiro
closed
2 years ago
0
Remove mention of metadata.json file
#44
allyhawkins
closed
2 years ago
0
Remove mention of metadata.json from download files
#43
allyhawkins
closed
2 years ago
0
Added download illustrations
#42
dvenprasad
closed
2 years ago
0
Add processing information for bulk RNA-sequencing
#41
allyhawkins
closed
2 years ago
2
add missing tech_version field to metadata
#40
jashapiro
closed
3 years ago
0
Make main content div wider
#39
jashapiro
opened
3 years ago
0
update code chunks
#38
jashapiro
closed
3 years ago
0
Make sure code chunks are designated with correct langauge
#37
allyhawkins
closed
3 years ago
0
Add SCE contents
#36
jashapiro
closed
3 years ago
1
epub fixes
#35
davidsmejia
closed
3 years ago
0
Add FAQ for using data in python instead of R
#34
allyhawkins
closed
3 years ago
1
Add FAQ on how to convert the SCE objects to Seurat objects
#33
allyhawkins
closed
3 years ago
2
FAQ for difference between sample and library ID
#32
allyhawkins
closed
3 years ago
3
Add cite-seq processing section
#31
jashapiro
closed
3 years ago
0
Add link to code for QC report
#30
allyhawkins
closed
3 years ago
3
Describe what genes are included in the reference transcriptome
#29
allyhawkins
closed
3 years ago
0
FAQ: What is the difference between a sample ID and library ID?
#28
allyhawkins
closed
3 years ago
0
Section: Gene expression file contents
#27
allyhawkins
closed
3 years ago
0
FAQ: How do convert the SingleCellExperiments to a Seurat object?
#26
allyhawkins
closed
3 years ago
0
theme docs
#25
davidsmejia
closed
3 years ago
4
Add download files section
#24
allyhawkins
closed
3 years ago
5
FAQ: What genes are used
#23
jashapiro
closed
3 years ago
0
Change docs to cr-like
#22
jashapiro
closed
3 years ago
0
Add FAQ about why we chose Alevin-fry
#21
allyhawkins
closed
3 years ago
2
Add filtering information to processing docs
#20
allyhawkins
closed
3 years ago
2
FAQ: Where can I see the code for the QC reports?
#19
jaclyn-taroni
closed
3 years ago
0
Processing Information for filtering post alevin-fry
#18
allyhawkins
closed
3 years ago
0
FAQ: Why do some samples have missing participant IDs?
#17
jaclyn-taroni
closed
3 years ago
1
Set up RTD
#16
jaclyn-taroni
closed
3 years ago
0
Add URL checker functionality to GHA
#15
jaclyn-taroni
opened
3 years ago
0
QC-related metadata found in filtered RDS objects
#14
jaclyn-taroni
closed
3 years ago
0
FAQ: How do I use RDS files with Python?
#13
jaclyn-taroni
closed
3 years ago
0
Add link to code that generates splici index
#12
allyhawkins
closed
3 years ago
0
Add spell check for markdown files
#11
allyhawkins
closed
3 years ago
1
FAQ: Why did you use alevin-fry?
#10
allyhawkins
closed
3 years ago
2
Processing Information for Bulk RNA-seq
#9
allyhawkins
closed
2 years ago
0
Processing Information for Spatial Transcriptomics
#8
allyhawkins
closed
2 years ago
0
Processing Information for CITE-seq
#7
allyhawkins
closed
3 years ago
0
Section: Download files
#6
dvenprasad
closed
2 years ago
7
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