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AlexsLemonade
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scpcaTools
BSD 3-Clause "New" or "Revised" License
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Ensure imported barcodes have no zero counts
#287
jashapiro
opened
1 week ago
0
Add rounding to alevin-fry import
#286
jashapiro
closed
1 month ago
0
Prepare for scpcaTools release v0.4.1
#285
jashapiro
closed
1 month ago
1
283 update lightning to fix critical alert
#284
jashapiro
closed
1 month ago
0
update lightning to fix critical alert
#283
jashapiro
closed
1 month ago
0
Add demuxmix functions
#282
jashapiro
opened
1 month ago
0
Set seeds conditionally
#281
jashapiro
closed
2 months ago
0
[BUG] Resetting seeds with NULL
#280
jashapiro
closed
2 months ago
0
Prep for v0.4
#279
jashapiro
closed
4 months ago
0
Prepare for scpcaTools release v0.4.0
#278
jashapiro
closed
4 months ago
2
Replace `fishpond` with `eds`
#277
jashapiro
closed
5 months ago
1
Add rtracklayer and updates
#276
jashapiro
closed
6 months ago
0
Actually update the renv
#275
jashapiro
closed
6 months ago
0
Add batchelor to the slim image
#274
jashapiro
closed
6 months ago
0
Update to R 4.4 & renv 3.19
#273
jashapiro
closed
7 months ago
1
Update renv and docker to R 4.4 and Bioconductor 3.19
#272
jashapiro
closed
7 months ago
0
Use a single Dockerfile and targets for more efficient building
#271
jashapiro
closed
7 months ago
1
Update python requirements and create slim docker image
#270
jashapiro
closed
7 months ago
2
Update to Bioc3.18 and reduce merge memory
#269
jashapiro
closed
7 months ago
1
Update description with v0.3.2
#268
allyhawkins
closed
8 months ago
0
Prepare for scpcaTools release v0.3.2
#267
allyhawkins
closed
8 months ago
0
pre-commit reformats
#266
jashapiro
closed
8 months ago
0
Create a slim scpcaTools docker image
#265
jashapiro
closed
7 months ago
1
Update column handling in merge_sce_list
#264
sjspielman
closed
10 months ago
0
merge_sce_list colData updates
#263
sjspielman
closed
10 months ago
0
Allow `include_altexps` to take a vector in `merge_sce_list`
#262
jashapiro
opened
10 months ago
0
Retain altexp coldata when specified
#261
sjspielman
closed
10 months ago
7
Allow for altExp colData columns to be retained when merging
#260
sjspielman
closed
10 months ago
0
Keep celltype annotation columns when merging SCEs
#259
sjspielman
closed
10 months ago
9
Ensure cell type labels are retained when merging SCEs
#258
sjspielman
closed
10 months ago
3
Add more altExp merging tests
#257
sjspielman
closed
11 months ago
0
remove python from renv tests
#256
jashapiro
closed
11 months ago
0
Address metadata during altexp merging and other metadata fixes
#255
sjspielman
closed
11 months ago
4
Add tests for merging SCEs where there are multiple different altexps
#254
sjspielman
closed
11 months ago
0
Use combineCols for merging SCEs
#253
jashapiro
closed
11 months ago
0
Make sure all sample metadata columns are compatible before merging
#252
allyhawkins
closed
11 months ago
3
Update altexp merging
#251
sjspielman
closed
11 months ago
6
Fix merging metadata bug
#250
sjspielman
closed
11 months ago
3
Consider union of genes when merging, not intersection
#249
sjspielman
opened
11 months ago
1
Allow for altExps with different features
#248
sjspielman
opened
11 months ago
1
Merging SCEs: Use union of features
#247
sjspielman
closed
11 months ago
4
Add an option to compress HDF5 files
#246
allyhawkins
closed
11 months ago
0
Add rowData to merged altexps
#245
sjspielman
closed
11 months ago
1
Support compression in `sce_to_anndata()`
#244
jashapiro
closed
11 months ago
1
Add functionality to merge altExps
#243
sjspielman
closed
11 months ago
6
Update renv & python
#242
jashapiro
closed
1 year ago
1
Use AddMetaData
#241
jashapiro
closed
1 year ago
0
Add precommit and specify Seurat version
#240
jashapiro
closed
1 year ago
0
Accomodate Seurat 5
#239
jashapiro
closed
1 year ago
0
Add pre-commit to this repo
#238
jashapiro
closed
1 year ago
0
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