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BMCV
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galaxy-image-analysis
Galaxy tools for image analysis
MIT License
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trigger ci, deploy missing tools
#79
kostrykin
closed
10 months ago
0
Skip lint on merge / minor other repo updates
#78
kostrykin
closed
10 months ago
1
imaging update: overlay_images
#77
thawn
closed
10 months ago
4
imaging 2d_simple_filter: changed input label to "Filter type"
#76
thawn
closed
10 months ago
0
overlay_images for segmentation masks should output png
#75
thawn
closed
6 months ago
7
general "refreshment" for the repo
#74
kostrykin
closed
10 months ago
0
adapts environment variables and annotations for SuperDSM
#73
kostrykin
closed
10 months ago
2
add bioformats2raw
#72
bugraoezdemir
closed
10 months ago
8
applies the new conventions for imaging tools agreed at BioHackEU23
#71
kostrykin
closed
10 months ago
7
fix remote repo urls
#70
bernt-matthias
closed
1 year ago
2
disables generation of pyramids for output formats which do not support pyramids in `bfconvert` tool
#69
kostrykin
closed
1 year ago
2
fixes the `seg_contour` method of the `overlay_images` tool
#68
kostrykin
closed
1 year ago
3
python: can't open file (No such file or directory)
#67
kostrykin
closed
1 year ago
2
permits png input for count_objects tool
#66
kostrykin
closed
1 year ago
0
update superdsm to 0.1.3
#65
kostrykin
closed
1 year ago
0
fixes required superdsm version to 0.1.2=*_1
#64
kostrykin
closed
1 year ago
5
minimal example of ray-core 2.3.0 issue
#63
kostrykin
closed
10 months ago
1
adds tool for superdsm (without ray patches)
#62
kostrykin
closed
1 year ago
0
adds tool for superdsm
#61
kostrykin
closed
1 year ago
0
adds tool for SuperDSM
#60
kostrykin
closed
1 year ago
0
`planemo test` fails for any tool
#59
kostrykin
closed
1 year ago
2
Updates segmetrics to most recent version and improves the UI of the tool
#58
kostrykin
closed
1 year ago
0
Updates workflows
#57
kostrykin
closed
1 year ago
0
Test PR for pr-fix branch
#56
kostrykin
closed
1 year ago
0
Slash Command Dispatch workflow run failed for master branch
#55
kostrykin
closed
1 year ago
6
fixes flake8 of 2d_filter_segmentation_by_features
#54
kostrykin
closed
1 year ago
4
Update: unzip
#53
tuncK
closed
1 year ago
7
migrates from csv to tsv
#52
kostrykin
closed
1 year ago
0
fixes misformatted output of segmetrics tool
#51
kostrykin
closed
1 year ago
0
updates help of the segmetrics tool
#50
kostrykin
closed
1 year ago
0
adds segmetrics tool
#49
kostrykin
closed
1 year ago
0
bfconvert - update version, add tests for ome.tiff and pyramid
#48
alliecreason
closed
2 years ago
4
added citation and moved deprecated tools
#47
qgao-hd
closed
2 years ago
1
moved deprecated tools into the deprecated folder
#46
qgao-hd
closed
2 years ago
2
bug fixes
#45
qgao-hd
closed
2 years ago
0
Updated tool "Landmark Registration": piecewise affine transformation included
#44
qgao-hd
closed
2 years ago
2
Added tool to normalize intensities of an image.
#43
carokrug
closed
2 years ago
5
added citation information
#42
qgao-hd
closed
2 years ago
2
updated workflows
#41
qgao-hd
closed
2 years ago
0
Made transformation matrix consistent across tools
#40
qgao-hd
closed
2 years ago
0
Fixed bugs and marked deprecated tools
#39
qgao-hd
closed
2 years ago
3
Added new tool "overlay_images"
#38
qgao-hd
closed
2 years ago
2
added new workflows
#37
qgao-hd
closed
2 years ago
0
Merged two tools: RANSAC-based and least squares-based landmark registration
#36
qgao-hd
closed
2 years ago
1
Updated tool spot_detection_2d: LoG filter included
#35
qgao-hd
closed
2 years ago
0
Updated tools and workflows
#34
qgao-hd
closed
2 years ago
0
updated workflows
#33
qgao-hd
closed
2 years ago
2
Updated the description of tool "projective_transformation_points"
#32
qgao-hd
closed
2 years ago
0
Updated tool "projective_transformation"
#31
qgao-hd
closed
2 years ago
3
Added a new tool and updated an existing tool
#30
qgao-hd
closed
2 years ago
15
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