BackofenLab IntaRNA-benchmark issues

BackofenLab / IntaRNA-benchmark

Data and scripts to benchmark IntaRNA

MIT License

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issues

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plot changes

#21 martin-raden opened 5 years ago
1
verification update

#20 martin-raden opened 5 years ago
0
additional sRNAs

#19 martin-raden opened 5 years ago
22
time/mem line plots : 1-based x-indexing

#18 martin-raden opened 5 years ago
2
[bugfix] max Int length handling

#17 martin-raden opened 5 years ago
1
change timing and memory monitoring

#16 RickGelhausen closed 5 years ago
2
splitted time and memory plots + added absolute line plots to each

#15 Fulanko closed 5 years ago
0
insufficient checks for precomputed ED

#14 martin-raden closed 5 years ago
1
number of threads as arg in qsub call

#13 martin-raden closed 5 years ago
1
store precomputed ED values in output dir

#12 martin-raden closed 5 years ago
0
[runtime/memory plot] add % scale on right side axis

#11 martin-raden closed 5 years ago
2
Add a check for modules in calls.py

#10 RickGelhausen opened 5 years ago
0
maybe verified sRNA data from degradome studies..

#9 martin-raden opened 5 years ago
0
verified_interactions.csv : add DOI or PUBMED

#8 martin-raden opened 5 years ago
0
reduce target sequences to mRNA

#7 martin-raden opened 5 years ago
2
validated bp information

#6 martin-raden opened 5 years ago
1
Boxplots and more

#5 RickGelhausen closed 6 years ago
0
violine plots for various max-rank thresholds

#4 martin-raden closed 6 years ago
4
Fixed bugs with ED-value computatation

#3 RickGelhausen closed 6 years ago
0
Enabling target ED-value precomputation

#2 RickGelhausen closed 6 years ago
0
Inta rna benchmark setup

#1 RickGelhausen closed 6 years ago
0