Bioconductor AnnotationHub issues

Bioconductor / AnnotationHub

Client for the Bioconductor AnnotationHub web resource

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issues

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Human EnsemblDB v112 is only available for GRCh37

#53 zyh4482 closed 2 weeks ago
1
Select() issue

#52 LucasMcNU closed 2 months ago
18
AnnotationHub and GO Terms

#51 famfigueiredo closed 4 months ago
1
Error with sesameDataCatche

#50 AndersJoergensen closed 5 months ago
2
remove defunct display method and doc

#49 LiNk-NY closed 6 months ago
0
Vignette title vs name of Rmd file

#48 hpages closed 6 months ago
2
Error: bad_weak_ptr when accessing annotation hub object using genes() (probable bug)

#47 klai001 opened 8 months ago
2
dbplyr update is breaking AnnotationHub

#46 mjsteinbaugh closed 8 months ago
3
Require explict consent when accessing data with restrictive licenses

#45 mtmorgan opened 8 months ago
0
Error: failed to load resource

#44 ericsan119 closed 8 months ago
3
R Cannot connect to AnnotationHub server

#43 gxt13111560461 closed 10 months ago
10
how to get CpGs for hg38 ?

#42 sahuno closed 10 months ago
3
permission denied cannot open compressed file

#41 Dane-Z opened 1 year ago
3
"R CMD check" failure on Linux ARM64

#40 martin-g closed 1 year ago
10
AnnotationHub Update

#39 gnatowskie closed 1 year ago
2
compress sqlite on server and download/uncompress locally to speed up download times

#38 lshep opened 1 year ago
1
Keras model + weights dispatch classes

#37 csoneson closed 1 year ago
1
.Defunct display,Hub-method

#36 LiNk-NY closed 1 year ago
4
"reason: this db is of type Inparanoid8Db but this is not a defined class"

#35 KMS-Rock opened 1 year ago
12
Add dcf recipe and to DispatchClassList

#34 LiNk-NY closed 1 year ago
1
Issue with executing AnnotationHub()

#33 jo-ong closed 2 years ago
2
Update AnnotationHub.Rmd

#32 mikelove closed 2 years ago
0
permission denied on lock file when using AnnotationHub cache

#31 daler closed 2 years ago
9
Adding/updating additional annotation data

#30 svenbioinf closed 2 years ago
1
QFeatures has been fixed

#29 cvanderaa closed 2 years ago
1
vignette inaccuracy

#28 vjcitn closed 2 years ago
1
Non-descriptive error

#27 BaylieRW closed 2 years ago
4
Fetching RepeatMasker Files with AnnotationHub

#26 mikecuoco closed 2 years ago
1
Clarify where the AWS CLI access key and secret should be stored

#25 csoneson closed 3 years ago
1
fix indentation and clarify on title

#24 mikelove closed 3 years ago
1
Poorly annotated plants

#23 Fred-White94 closed 3 years ago
2
ah <- AnnotationHub() ---error--- filter_() is deprecated as of dplyr 0.7.0

#22 CQgit closed 3 years ago
6
AnnotationHub() Error

#21 JojoZhangxinye closed 3 years ago
3
AnnotationHub(): Server access test is too conservative (with suggestions)

#20 HenrikBengtsson closed 3 years ago
1
HELP: setHubOption() -> setAnnotationHubOption()

#19 HenrikBengtsson closed 3 years ago
0
Add BugReport: https://github.com/Bioconductor/AnnotationHub/issues (?)

#18 HenrikBengtsson closed 3 years ago
1
Cannot connect to AnnotationHub server

#17 reliscu closed 3 years ago
3
Using AnnotationHub with job schedular causes an error

#16 kokitsuyuzaki opened 3 years ago
1
Issue converting Ensembl GTFs

#15 jmacdon closed 4 years ago
25
Failed compilation with R-3.5.1

#14 sk-sahu closed 4 years ago
3
EnsDb.Hsapiens.v99

#13 Ci-TJ closed 4 years ago
9
Hard time troubleshooting a "Corrupt Cache" issue

#12 hpages closed 3 years ago
4
Accessing a resource with a snapshotDate() before it was available gives a cryptic error

#11 mtmorgan closed 4 years ago
3
AnnotationHub::display() giving incorrect output

#10 MattBrauer closed 4 years ago
14
Invertebrate Ensembl ID

#9 kokitsuyuzaki closed 4 years ago
11
Fix typo in documentation related to CACHE

#8 mjsteinbaugh closed 5 years ago
1
fixed windows specific BamFile loading error

#7 FelixErnst closed 5 years ago
6
added BamFileResource class

#6 FelixErnst closed 5 years ago
24
AnnotationHub()

#5 Indigofera closed 5 years ago
14
curl::has_internet and proxies

#4 wresch closed 6 years ago
5