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Bioconductor
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bioconductor_docker
Docker Containers for Bioconductor
https://bioconductor.org/help/docker/
Artistic License 2.0
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Add GHCR to 3_16
#57
almahmoud
closed
1 year ago
0
Update devel for 3.17
#56
almahmoud
closed
1 year ago
0
Add base image and tag to gha
#55
almahmoud
closed
1 year ago
2
leidenalg for Bioc pkg scBubbletree
#54
jwokaty
opened
1 year ago
0
Add libarchive-dev apt package
#53
zeehio
closed
1 year ago
0
MCR doesn't host bioconductor images anymore
#52
nturaga
opened
2 years ago
1
Could not connect to the R session on RStudio Server
#51
rgaiacs
closed
2 years ago
1
Update R to 4.2.1 as per build system
#50
nturaga
closed
2 years ago
0
Major update: Add gpu support to Bioconductor containers [WIP]
#49
nturaga
opened
2 years ago
0
Update to R4.2.1
#48
jwokaty
closed
2 years ago
1
Add python3.8-venv in the docker image
#47
nturaga
closed
2 years ago
0
Add python3.8-venv to the bioconductor_docker container?
#46
mtmorgan
closed
2 years ago
0
Pip install torch
#45
jwokaty
opened
2 years ago
3
Bioconductor docker devel update
#44
nturaga
closed
2 years ago
0
Update to R-4.1.3
#43
nturaga
closed
2 years ago
1
Add libgdal-dev to RELEASE_3_14
#42
nturaga
closed
2 years ago
0
Patch reinstall anvil package
#41
nturaga
closed
2 years ago
0
Separate out system dependencies of Bioconductor.
#40
nturaga
closed
2 years ago
6
R/Rstudio version conflict
#39
bschilder
opened
2 years ago
7
Failed bioconductor package installations do not cause docker builds to stop
#38
pmoris
opened
2 years ago
3
Conflicting definitions of "devel"/"release" between actual Bioconductor and bioconductor_docker
#37
bschilder
closed
2 years ago
12
Remove python2 completely from Dockerfile.
#36
nturaga
closed
3 years ago
2
R graphics engine version 14 is not supported by this version of RStudio
#35
lgatto
opened
3 years ago
4
Missing `checkbashisms` script creates warning from running check
#34
omsai
opened
3 years ago
0
volume setup for caching basilisk infrastructure?
#33
vjcitn
opened
3 years ago
1
Move dependencies out of Dockerfile
#32
jwokaty
opened
3 years ago
9
Move apt dependencies out of Dockerfile
#31
jwokaty
closed
3 years ago
1
Error in .install_repos, argument "force" is missing, with no default
#30
jwokaty
closed
3 years ago
3
Update `latest` version to be the same as `RELEASE_3_13`
#29
nuno-agostinho
closed
3 years ago
5
Install parallel BLAS on bioconductor_docker image
#28
nturaga
opened
3 years ago
0
Any call to `ggplot2` in the current `bioconductor_docker:devel` image makes `R`/`Rstuido` **CRASH**
#27
r-cheologist
opened
3 years ago
4
Add experimental docker compose file
#26
nturaga
closed
3 years ago
1
Use http for RStudio URL
#25
rushtehrani
closed
3 years ago
1
bug: new library path auto added to .libPaths() upon mounting a volume
#24
nturaga
closed
3 years ago
1
Create new versioning system
#23
nturaga
closed
3 years ago
0
ERROR; return code from pthread_create() is 22 when calling preprocessCore::normalize.quantiles()
#22
lgatto
closed
11 months ago
12
Add some diagnostics and another test
#21
seandavi
closed
3 years ago
1
Add installation testing in both release and devel built images
#20
seandavi
closed
3 years ago
2
Add canary testing for package installation in built containers
#19
seandavi
closed
3 years ago
0
missing harfbuzz freetype2 fribidi
#18
nsheff
closed
3 years ago
5
Question: When will Docker for Bioconductor 3.12 be available?
#17
mblue9
closed
3 years ago
0
Update bioconducotor_docker:devel
#16
nturaga
closed
4 years ago
0
Problems with packagemanager.rstudio.com
#15
lwaldron
closed
3 years ago
3
rocker version for bioc-devel
#14
lwaldron
closed
3 years ago
2
Link to localhost in Documentation Gives SSL Error
#13
const-ae
closed
4 years ago
2
BiocManager attached on start up
#12
lgatto
closed
3 years ago
4
What is the recommended way to run R CMD check with these containers?
#11
nsheff
opened
4 years ago
7
Why not use R_LIBS_* variables instead of hard-coded container library?
#10
nsheff
opened
4 years ago
6
RStudio debugger broken
#9
Shians
closed
4 years ago
1
R devel version lagging significantly
#8
lwaldron
closed
4 years ago
4
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