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TCGAbiolinks
TCGAbiolinks
http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
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GDCprepare Error in Ops.data.frame(y[, 1], x[[1]][, 1]) : ‘==’ only defined for equally-sized data frames
#484
swapnil-nis
closed
2 years ago
2
Can not Download SKCM clinicaldata
#483
liujilei156231
closed
2 years ago
4
TCGA-LIHC dataset_ dataLIHC not found
#482
Pandrews17
opened
2 years ago
1
Can I get the number of affectted cases in a cohort of a somatic mutation by query with GDCquery_Maf?
#481
Xu-Dong
closed
2 years ago
1
Add support to download and read open scRNA-Seq data
#480
tiagochst
opened
2 years ago
0
Delta column of TCGAanalyze_LevelTab function is misleading / buggy
#479
shucon
opened
2 years ago
0
GDCprepare() returns Error in function (classes, fdef, mtable)
#478
mattpedone
closed
2 years ago
4
GDCprepare returning error with duplicated samples.
#477
DarkHe007
opened
2 years ago
2
Missing genes in summarizedexperiment object
#476
abuturabnaqvi
closed
2 years ago
5
GDCprepare error: all assays must have the same nrow and ncol
#475
gbrsales
closed
2 years ago
7
Error for GDCprepare - please help
#474
kennyyeo13
closed
2 years ago
1
GDC server down, try to use this package later
#473
boseb
closed
2 years ago
1
GDCprepare issue 'Too many files open'
#472
bas-dev
opened
3 years ago
6
Fix recount2
#471
Yue-Jiang
closed
2 years ago
1
error in GDCprepare
#470
ch8316f5eyu
opened
3 years ago
11
Questionable tumor stage annotations for normal controls
#469
ATpoint
closed
2 years ago
1
TCGAbiolinks Crashes R When Trying to Use GDCPrepare to Prepare More Than One Project
#468
compbiolover
closed
3 years ago
11
Splice Junction files retrieval
#467
elenichri
opened
3 years ago
1
Splice Junction files
#466
elenichri
closed
3 years ago
0
TCGA CNV data without sample type options?
#465
ShaowenJ
opened
3 years ago
2
TCGA-LAML CNV data
#464
renhuasong
closed
2 years ago
1
Problem with GDCprepare of TARGET-NBL project
#463
mona-n
opened
3 years ago
1
Error: "Subscript out of bounds" when filtering for specific sample type
#462
andysontran
closed
3 years ago
1
TARGET-ALL-P3 GDCprepare issue
#461
brdfrdd
closed
3 years ago
2
Get difference sample number when using TCGAbiolinks to download TCGA-COAD dataset!
#460
xiekunwhy
closed
2 years ago
1
Error in strsplit(c(colnames(data)), "-") : non-character argument
#459
kalyanidhusia
opened
3 years ago
1
discrepancy in number of samples
#458
Xiaofei-git
opened
3 years ago
0
How to extract colnames form RangedSummarizedExperiment
#457
ivy-yuan
closed
3 years ago
1
error reading from connection (Error in load(url(con)))
#456
Xiaofei-git
closed
2 years ago
2
Downloading data using manifest file
#455
jnrmro
closed
2 years ago
1
*URGENT* Gene ID totally missing in downloaded expression data.. A bug or a problem with GDC data?
#454
ghost
closed
3 years ago
0
Her2 status for colorectal data
#453
RB786
opened
3 years ago
0
File.type=normalized_results
#452
carlasanchez99
closed
3 years ago
0
Error when query clinical data
#451
jacorvar
closed
2 years ago
0
Can parsetools cause TCGAbiolinker error?
#450
blacktulip-g
closed
2 years ago
0
TCGAvisualisevolcano plot height bug
#449
wp1g19
closed
3 years ago
1
TCGAvisualize_starburst needs updating
#448
Richies8
closed
2 years ago
0
GDCquery_clinic no longer works
#447
Richies8
closed
3 years ago
0
GDCquery no disease.type parameter?
#446
Liripo
closed
3 years ago
1
GDCprepare - Download error for TCGA-PRAD methylation array
#445
CarlosUziel
closed
3 years ago
2
Failed in using barcode to filter the samples to download
#444
huatang5
closed
2 years ago
1
data dowloaded by TCGAbiolinks cannot by processed via maftools
#443
huatang5
closed
3 years ago
1
GDCprepare() function error
#442
mdkessler
closed
3 years ago
1
Can't import packages
#441
GD-Wong
closed
3 years ago
0
Error in Paired analysis in TCGAanalyze_DEA
#440
17ray
opened
3 years ago
2
GDCprepare `as_data_frame()` is deprecated as of tibble 2.0.0.
#439
MercedesBentata
closed
3 years ago
0
GDCprepare can't find the files
#438
MercedesBentata
closed
3 years ago
2
getProjectSummary()
#437
avrajit
closed
3 years ago
1
What's the definition of the paper_iCluster.Group variable
#436
beerzyp
opened
3 years ago
1
get.pair from TCGAbiolinks not working.
#435
NikolayAlabi
closed
2 years ago
1
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