issues
search
BioinformaticsFMRP
/
TCGAbiolinks
TCGAbiolinks
http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
286
stars
109
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Duplicated samples for THCA RPPA
#533
rhughwhite
opened
1 year ago
0
Survival data: days_to_last_follow_up value is zero for some patients
#532
Bharathwaj8900
opened
1 year ago
0
Error/Bug: "All samples have been already downloaded"
#531
biostars-nyc
opened
1 year ago
1
Error in `levels<-`(`*tmp*`, value = as.character(levels)) : factor level [593] is duplicated
#530
Pravithaks
opened
1 year ago
3
TCGAanalyze_DEA for SKCM
#529
MartinBaGar
closed
1 year ago
2
TCGAanalyze_SurvivalKM function double counting
#528
animesh
opened
1 year ago
0
Error in obtaining HTSeq - count data for TCGA-PRAD
#527
ArvinZaker
closed
1 year ago
3
GDCprepare with duplicated samples error when querying TCGA-STAD mutation data
#526
lhcg1989613
opened
2 years ago
2
Matching Clinical and RNA Samples
#525
sylvia-science
opened
2 years ago
1
TCGAanalyze_Normalization-STAR counts-infoHT
#524
Pearl520
opened
2 years ago
0
Mislabeled sample ID for ASCAT data
#523
ShixiangWang
closed
2 years ago
3
Error in download.file(url, method = method, ...): download from 'https://gdc.cancer.gov/files/public/file/gdc-client_v1.6.1_OSX_x64.zip' failed
#522
BarryWang0905
opened
2 years ago
4
Update TCGAbiolinks handle new projects
#521
tiagochst
opened
2 years ago
0
Duplicated cases when querying TCGA-CHOL mutation data
#520
Dan-H-Jacobson
opened
2 years ago
1
Downloading issue for project TCGA-GBM
#519
snashraf
closed
1 year ago
10
Sample type comes in pairs for SNV and CNV in TCGA-BRCA
#518
pilargmarch
closed
8 months ago
0
TARGET-NBL sample/file duplication error when downloading star - counts
#517
FerrenaAlexander
opened
2 years ago
6
BRAF V600E is not the most common mutatin in lollipopPlot?? i see the raw data and no V600E in HGVSp_Short
#516
dannyteng1971
closed
2 years ago
14
Can't do COAD data normalization
#515
git-jrwang
opened
2 years ago
3
How to get VAF from open-acess TCGA somatic mutation file
#514
WarrenSu2022
opened
2 years ago
0
How to get CNV status and cytoband information
#513
komalsrathi
opened
2 years ago
8
Error in if (ret == 1) break : argument is of length zero while downloading SNV data
#512
swapnil-nis
opened
2 years ago
16
GDCquery_Maf not working
#511
kcmtest
opened
2 years ago
5
Different length of column in maf files
#510
yujung-c
closed
2 years ago
2
query.maf.hg19 different numbers of column length
#509
yujung-c
closed
2 years ago
0
GDCdownload error
#508
biosyssun
closed
2 years ago
0
GDCprepare caused R crash
#507
biosyssun
opened
2 years ago
9
GDCprepare output ERROR
#506
liujilei156231
closed
2 years ago
3
CPTAC STAR - Counts download ERROR
#505
liujilei156231
closed
2 years ago
2
GDCquery with no access to Gene Level Copy Number Scores
#504
luisgls
opened
2 years ago
7
Use data.table to merge results for different cases
#503
ShixiangWang
closed
2 years ago
2
tcgabiolinks Error: Resource temporarily unavailable
#502
sanazmo
closed
2 years ago
2
GDCdownload() does not work with recently updated splice junction data
#501
ryanhchung
closed
2 years ago
2
STAR Counts error
#500
Sandyyy123
opened
2 years ago
1
Error in names(y) <- 1:length(y) : in STAR-counts
#499
aysenuroner
opened
2 years ago
3
GDCquery error when querying mutation data
#498
komalsrathi
closed
2 years ago
5
Issue with Tidyverse package
#497
BAREJAA
closed
2 years ago
4
getProjectSummary() missing
#496
mikegluk
closed
2 years ago
2
Problem with GDCquery when setting workflow.type="HTSeq - FPKM"
#495
N0toriou5
closed
2 years ago
5
Github pages website is down
#494
abalter
closed
2 years ago
1
GDCprepare() does not work with last update of GDC v32.0 for RNA-Seq
#493
g27182818
opened
2 years ago
16
geneInfoHT table used by TCGAanalyze_Normalization is missing information for many genes
#492
HelenePetersen
closed
2 years ago
5
GDCprepare unable to integrate CPTAC-3 methylation data
#491
shadihames
opened
2 years ago
2
GDCprepare error with TARGET-ALL-P2
#490
ronkesm
opened
2 years ago
1
Error in assay (or assays) function
#489
HeenaBioinfo
closed
2 years ago
6
Need help with one error
#488
shahabusmani
opened
2 years ago
1
can not get msi data of OV
#487
asmlgkj
opened
2 years ago
4
GDCprepare error "all assays must have the same nrow and ncol"
#486
pauladb1
closed
2 years ago
3
gdcprepare error: ‘==’ only defined for equally-sized data frames
#485
aastha-v
closed
2 years ago
4
GDCprepare Error in Ops.data.frame(y[, 1], x[[1]][, 1]) : ‘==’ only defined for equally-sized data frames
#484
swapnil-nis
closed
2 years ago
2
Previous
Next