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BlueBrain
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morphoclass
Neuronal morphology preparation and classification using Machine Learning.
https://morphoclass.readthedocs.io
Apache License 2.0
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Correction for visualization
#91
lidakanari
opened
3 months ago
1
fix typo
#90
KeremKurban
opened
10 months ago
0
Modify CLI command `morphoclass train`
#89
EmilieDel
opened
1 year ago
0
Create CLI command `morphoclass predict`
#88
EmilieDel
opened
1 year ago
0
Create a `predict` command in the CLI
#87
EmilieDel
opened
1 year ago
1
`tmd==2.2.0` changed slightly the API
#86
EmilieDel
opened
1 year ago
0
Update tmd version
#85
EmilieDel
closed
1 year ago
0
Add new set of features for morphometrics
#84
EmilieDel
opened
1 year ago
0
Test dvc repro with k-fold=10
#83
EmilieDel
opened
1 year ago
0
Add justification of xgboost version bounds
#82
EmilieDel
opened
2 years ago
0
Remove last mention of `deepmorphs` in `docs`
#81
EmilieDel
opened
2 years ago
0
Improve documentation of `DVC` pipeline in `dvc/README.md`
#80
FrancescoCasalegno
closed
2 years ago
0
"Segmentation fault: 11" error when using pretrained dataset
#79
YannRoussel
opened
2 years ago
2
Update Docs on using CNN and PersLay
#78
FrancescoCasalegno
closed
2 years ago
0
Janelia l5 inter rater
#77
FrancescoCasalegno
closed
2 years ago
4
`MorphologyDataset` has no method `to_persistence_dataset()`
#76
FrancescoCasalegno
closed
2 years ago
0
Complete labeling (second expert opinion) of Janelia L5
#75
FrancescoCasalegno
closed
2 years ago
0
Collect annotations from Julie on `janelia-l5` to compute inter-rater agreement
#74
FrancescoCasalegno
closed
2 years ago
0
Fix issues related to MCAR curation failing on zero-length sections
#73
FrancescoCasalegno
closed
2 years ago
1
Fix usage of `skip` in MCAR curation `luigi` configuration
#72
FrancescoCasalegno
closed
2 years ago
0
Clean up `mcar-luigi.cfg` configuration for `MCAR` curation workflow
#71
FrancescoCasalegno
closed
2 years ago
1
MCAR curation deletes several neurites so resulting morpholiges are unusable
#70
FrancescoCasalegno
closed
2 years ago
1
New stages for IN with PROJ in dvc.yaml
#69
FrancescoCasalegno
closed
2 years ago
0
Chance accuracy seems to depend on the neurite
#68
FrancescoCasalegno
closed
2 years ago
8
Run training using `proj` instead of `rd` for interneurons (`in`)
#67
FrancescoCasalegno
closed
2 years ago
0
Harmonize output paths of `morphometrics` commands
#66
FrancescoCasalegno
closed
2 years ago
0
Compute chance agreement on 'splits' instead of 'all'
#65
FrancescoCasalegno
closed
2 years ago
0
`performance-table` fails: `chance_agreement` cannot get `data["all"]["ground_truths"]`
#64
FrancescoCasalegno
closed
2 years ago
1
`docker build` fails at `apt-get update` because `public key is not available: NO_PUBKEY`
#63
FrancescoCasalegno
closed
2 years ago
0
Fix CUDA Docker image bug + Improve Dockerfile + Add requirements-extra.txt
#62
FrancescoCasalegno
closed
2 years ago
0
Refactor `morphoclass morphometrics` CLI + Fix SSH
#61
FrancescoCasalegno
closed
2 years ago
0
Train morphometrics models for `in-merged` and `in-merged-bc-merged` datasets
#60
FrancescoCasalegno
closed
2 years ago
0
Dvc stage description
#59
FrancescoCasalegno
closed
2 years ago
0
Remove unused experimentation datasets
#58
FrancescoCasalegno
closed
2 years ago
0
Check status of `AA0012.ASC` and `AA0180.ASC` cells for Janelia L5 dataset
#57
FrancescoCasalegno
closed
2 years ago
1
Add unit tests for `morphoclass.features.non_graph`
#56
FrancescoCasalegno
opened
2 years ago
0
Use StrPath for arguments of pathlib.Path()
#55
FrancescoCasalegno
closed
2 years ago
0
Remove manual install of `wheels` and `setuptools` from `install.sh`
#54
FrancescoCasalegno
closed
2 years ago
0
Remove unused datasets
#53
FrancescoCasalegno
closed
2 years ago
0
Add banner
#52
FrancescoCasalegno
closed
2 years ago
0
Consider consistently using `types.StrPath`
#51
Stannislav
closed
2 years ago
0
Chance accuracy
#50
FrancescoCasalegno
closed
2 years ago
0
Compute "chance agreement" baseline
#49
FrancescoCasalegno
closed
2 years ago
1
Compute metrics during evaluation, not during training
#48
FrancescoCasalegno
opened
2 years ago
0
Tag release `v0.1.0`: feature-complete version for paper
#47
FrancescoCasalegno
opened
2 years ago
0
Remove legacy code
#46
Stannislav
closed
2 years ago
2
Compute balanced accuracy metric
#45
FrancescoCasalegno
closed
2 years ago
1
Add {train,evaluate}-lida-in-merged-... stages
#44
Stannislav
closed
2 years ago
2
Inter-rater agreement data for Janelia Pyramidal Cells Layer 5
#43
FrancescoCasalegno
closed
2 years ago
0
Bump numpy from 1.20.3 to 1.21.0
#42
dependabot[bot]
closed
2 years ago
2
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