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BrooksLabUCSC
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flair
Full-Length Alternative Isoform analysis of RNA
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Flair collapse stopping without error
#175
milo-melo
closed
3 years ago
4
Flair.py collapse error - NameError: name 'res' is not defined
#174
andy941
closed
9 months ago
4
predictProductivity.py Error: cannot construct subsequence with negative offset or length < 1
#173
zoucheng123
closed
2 years ago
2
plot_isoform_usage.py does not work - changing minreads does not help
#172
slsotcheff
opened
3 years ago
0
DiffExp - problems with rpy2 and R
#171
LilyWC
closed
2 years ago
2
collapse fails silently if fastq is missing or not an absolute path
#170
diekhans
closed
2 years ago
2
python version confusion
#169
diekhans
closed
2 years ago
4
Unable to handle soft-masked reference genome
#168
ctl43
closed
2 years ago
2
Get read IDs along with transcript IDs
#167
Akanksha2511
closed
2 years ago
1
PSI calculate
#166
YZYwoazzzzz
opened
3 years ago
0
Flair collapse and quantify "--stringent" option.
#165
JasperBoom
closed
2 years ago
1
FLAIR COLLAPSE
#164
aline2593
closed
2 years ago
1
flair quantify --tpm option
#163
callumparr
closed
2 years ago
1
too many single-exon transcripts
#162
robinycfang
closed
9 months ago
6
No differential isoform usage output?
#161
wigge206
closed
2 years ago
2
Flair collapse not finishing
#160
jchang97
closed
2 years ago
4
Remove repeated package from env yaml
#159
baraaorabi
closed
2 years ago
1
in flair.py correct, no data read into splice junctions when junctions file has strand '0'
#158
alfredsimkin
opened
3 years ago
0
More inconsistent reads when use -j in addition
#157
zhenLiuXplr
opened
3 years ago
0
losing crucial reads due to correct step
#156
mvheetve
closed
9 months ago
2
predictProductivity.py error
#155
zoucheng123
closed
2 years ago
5
diffSplice
#154
aheravi
closed
2 years ago
1
diffExp
#153
aheravi
closed
2 years ago
1
NameError: name 'tqdm' is not defined in ssCorrect.py
#152
shaniAmare
closed
2 years ago
3
Rpy2 vs numpy: compatibility issues
#151
leticia-castro
closed
2 years ago
3
Entry name must contain underscore-delimited transcriptid and geneid like so error
#150
callumparr
closed
2 years ago
1
memory allocation error during flair collapse
#149
callumparr
closed
2 years ago
1
collapse psl_to_sequence.py Error when using bed files
#148
MustafaElshani
closed
3 years ago
1
when -nvrna used caused [ERROR] failed to open file '40'
#147
MustafaElshani
closed
2 years ago
1
Combined samples and then map or map samples separately?
#146
callumparr
closed
2 years ago
1
File or directory missing during initial step
#145
callumparr
closed
2 years ago
2
error with quantify
#144
lufeng891109
closed
3 years ago
0
Some result that I can't explain
#143
tlz4320
opened
3 years ago
1
flair correct fails to produce an output file
#142
jnoms
closed
3 years ago
1
How to read the result of plot_isoform_usage.py
#141
baizixiansheng
opened
3 years ago
0
collapse step_root directory space
#140
halfrt
closed
3 years ago
1
Flair-collapse no output
#139
sunqiangzai
closed
2 years ago
4
Error on Collapse command
#138
RichardCorbett
closed
2 years ago
1
isoforms quantification
#137
Matthijnssenslab
closed
2 years ago
1
short read correction
#136
charreca
closed
1 year ago
3
new release regarding issue #116
#135
mvheetve
closed
2 years ago
1
correct error - ssCorrect.py
#134
halfrt
closed
2 years ago
6
"flair.py correct" error occured
#133
swZhang1
closed
4 years ago
1
`pip install flair` does install non-specfic flair (A very simple framework for state-of-the-art NLP)
#132
akk01
closed
2 years ago
2
Error in diffExp
#131
shamsbhuiyan
closed
2 years ago
1
Annotate 5'UTR, CDS, 3UTR in FLAIR isoform
#130
akk01
opened
4 years ago
5
Low coverage of reads mapped to isoform
#129
wigge206
opened
4 years ago
3
Empty corrected files & No GTF conversion
#128
MustafaElshani
closed
4 years ago
2
Salmon quantification error
#127
Echo1610
closed
4 years ago
0
runDS error
#126
BeatrizdeToledo
closed
2 years ago
2
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