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BrooksLabUCSC
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flair
Full-Length Alternative Isoform analysis of RNA
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FLAIR correct error with chr1_inconsistent.bed?
#217
seongwoohan
closed
2 years ago
1
RGB code issue in .bed12 output for single exons
#216
suegrimes
opened
2 years ago
0
Flair Collapse: NameError: name 'res' is not defined
#215
itslittman
closed
2 years ago
7
diffExp incomplete output
#214
MustafaElshani
closed
1 year ago
2
predictProductivity 'inconsistent naming convention' error
#213
MustafaElshani
closed
2 years ago
11
deFLAIR cannot run on more than two groups
#212
Jeltje
opened
2 years ago
0
assign reads into isoforms without mapping
#211
xieyy46
closed
2 years ago
2
Truncated, non-full length reads
#210
vicasze
closed
2 years ago
6
Interpreting output
#209
ajritter8
closed
2 years ago
9
Pip installable version
#208
Jeltje
closed
2 years ago
0
flair correct error
#207
guandailu
closed
2 years ago
2
no .bed out from flair.py align
#206
MustafaElshani
closed
2 years ago
2
annotation_reliant index out of range
#205
mintstella0419
closed
2 years ago
0
failed at counting step for isoform read support [COLLAPSE]
#204
Drosofriends
closed
2 years ago
18
fixed args for collapse
#203
xyloforce
closed
2 years ago
0
Fatal error: unable to initialize the JIT
#202
wenmm
closed
1 year ago
1
list index out of range while retraining TARSClassifier
#201
zeos
closed
2 years ago
1
ssCorrect.py FileNotFoundError when running flair correct
#200
peterthorpe5
closed
2 years ago
5
plot_isoform_usage.py can not create gene_name_isoforms.png
#199
kabanowa47
closed
2 years ago
1
what is the firstpass.sam and firstpass.q.sam
#198
alexyfyf
closed
2 years ago
4
error in diff_Splice
#197
changeran
closed
1 year ago
1
Error in rbind for diffExp module
#196
eschiks
closed
2 years ago
0
diffsplice_fishers_exact.py produces adjusted pvalue?
#195
MarLee39
closed
1 year ago
1
firstpass.q. sam is empty
#194
AnastasiyaKazachenka
closed
2 years ago
3
Minimum number of ONT reads per sample
#193
ms-gx
closed
2 years ago
1
I tried every annotation in python flair.py align but gets this issue
#192
seongwoohan
closed
2 years ago
1
5' ends not well defined
#191
lananh-ngn
closed
7 months ago
3
FLAIR collapse generating big bed file
#190
lananh-ngn
closed
2 years ago
0
No filter_isoforms_by_proportion_of_gene_expr.py
#189
bmm514
closed
2 years ago
1
flair collapse stops without error message
#188
callumparr
closed
2 years ago
4
Problem with revcomp() in psl_to_sequence.py
#187
bmm514
closed
2 years ago
2
Error in ssCorrect.py when using Docker
#186
Eduardo-vsouza
closed
2 years ago
1
diffsplice outputs lr values
#185
ozgegizlenci
closed
2 years ago
1
FALIR collapse subprocess.py
#184
AnastasiyaKazachenka
closed
2 years ago
0
What SALMON method does FLAIR quantify use when called with --salmon?
#183
bayraktar1
closed
2 years ago
1
A false transcript cooordinate?
#182
OlgaVT
closed
2 years ago
1
Fixed bugs and enhanced isoform quantification
#181
ctl43
closed
2 years ago
2
Error in correct, line 377 Too many open files
#180
J-Calvelo
closed
6 months ago
1
Another error when using collapse
#179
ttmgr
closed
2 years ago
2
error when using flair collapse
#178
wuhao08
closed
2 years ago
10
diffsplice not producing the p-value with --test
#177
dar19
closed
1 year ago
1
.yaml file does not solve
#176
pgupta3005
closed
1 year ago
3
Flair collapse stopping without error
#175
milo-melo
closed
2 years ago
4
Flair.py collapse error - NameError: name 'res' is not defined
#174
andy941
closed
7 months ago
4
predictProductivity.py Error: cannot construct subsequence with negative offset or length < 1
#173
zoucheng123
closed
1 year ago
2
plot_isoform_usage.py does not work - changing minreads does not help
#172
slsotcheff
opened
3 years ago
0
DiffExp - problems with rpy2 and R
#171
LilyWC
closed
1 year ago
2
collapse fails silently if fastq is missing or not an absolute path
#170
diekhans
closed
2 years ago
2
python version confusion
#169
diekhans
closed
1 year ago
4
Unable to handle soft-masked reference genome
#168
ctl43
closed
2 years ago
2
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