BuildACell txtlsim issues

BuildACell / txtlsim

Cell-free expression modeling toolbox for MATLAB

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Minimal mcmc simbio

#43 vipulsinghal02 opened 6 years ago
2
Merge MCMC parameter estimation toolbox

#42 murrayrm opened 6 years ago
7
added a gitignore file to the repository root

#41 vipulsinghal02 closed 7 years ago
0
txtl_protein_AraC throws error

#40 whalter86 opened 7 years ago
4
Create mechanism for implementing vesicle models

#39 murrayrm opened 7 years ago
1
getting of alias file that doesn't work

#38 murrayrm closed 7 years ago
0
txtl_tutorial.html alias is broken

#37 murrayrm closed 7 years ago
1
Numerical issues due to high stoichiometry coefficients

#36 murrayrm closed 7 years ago
6
Update documentation with info on numerical stability issues

#35 vipulsinghal02 opened 7 years ago
2
Parameter estimation and documentation

#34 vipulsinghal02 opened 7 years ago
2
Update documentation

#33 vipulsinghal02 opened 7 years ago
2
Add new circuit capabilities

#32 vipulsinghal02 opened 7 years ago
5
Carry out simple Identifiability analysis for some of the toolbox architecture options

#31 vipulsinghal02 opened 7 years ago
0
Removing extraneous reactions

#30 vipulsinghal02 opened 7 years ago
3
RBS management

#29 vipulsinghal02 closed 7 years ago
1
Create Bayesian Parameter inference support

#28 vipulsinghal02 opened 7 years ago
0
Centralized parameter handling

#27 murrayrm opened 7 years ago
2
possible device driver setup issue [Nov 2012]

#26 murrayrm opened 7 years ago
2
Create a python version of the toolbox

#25 murrayrm opened 7 years ago
11
Create a 'pure' mode to simulate PURExpress reactions

#24 murrayrm opened 7 years ago
0
Transfer repository information from SourceForge to GitHub

#23 murrayrm opened 7 years ago
1
Change the transcription aux equation [sf#22]

#22 murrayrm closed 7 years ago
3
develop framework for crosstalk [sf#21]

#21 murrayrm opened 7 years ago
1
Characteriza RNase loading and action [sf#20]

#20 murrayrm opened 7 years ago
0
Combinations of parts [sf#19]

#19 murrayrm opened 7 years ago
1
Add parameter sources in config files [sf#18]

#18 murrayrm opened 7 years ago
0
Consistency of naming conventions [sf#17]

#17 murrayrm opened 7 years ago
1
plate, scan, heatmap and associated features [sf#16]

#16 murrayrm opened 7 years ago
0
Fix the DNA-RNA subplot in the txtl_plot command [sf#15]

#15 murrayrm opened 7 years ago
1
separate out config files for proteins and promoters. [sf#14]

#14 murrayrm closed 7 years ago
3
Add module based handling of antisense and attenuator sequences [sf#13]

#13 murrayrm opened 7 years ago
3
Add dilution mode [sf#12]

#12 murrayrm opened 7 years ago
1
Use Zach's data to characterize ClpX [sf#11]

#11 murrayrm opened 7 years ago
0
add ssrA degradation capability for las, lux, etc. [sf#10]

#10 murrayrm closed 7 years ago
2
Consistency in the config files [sf#9]

#9 murrayrm opened 7 years ago
0
Add antisense 'no_protein' case to txtl_plot [sf#8]

#8 murrayrm opened 7 years ago
1
default Extract buffer file, with user specified differences [sf#7]

#7 murrayrm opened 7 years ago
0
Append parameter status to each parameter [sf#6]

#6 murrayrm opened 7 years ago
1
In Code Documentation [sf#5]

#5 murrayrm opened 7 years ago
1
replace old addreaction format with txtl_addreaction [sf#4]

#4 murrayrm closed 7 years ago
3
add txtl_enzyme function [sf#3]

#3 murrayrm opened 7 years ago
0
bring back the enzymatic reaction for RNase [sf#2]

#2 murrayrm closed 7 years ago
2
txtl_plot search for matured proteins to plot [sf#1]

#1 murrayrm closed 7 years ago
1