issues
search
CellProfiler
/
python-bioformats
Read and write life sciences file formats
Other
132
stars
46
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
cd up after building docs
#70
mcquin
closed
8 years ago
0
deploy to PyPI on tag
#69
mcquin
closed
8 years ago
2
1.0.9 release
#68
mcquin
closed
8 years ago
0
Shim to pip install in python2+3 (#56)
#67
jnj16180340
closed
8 years ago
4
Set series before fetching image properties.
#66
mcquin
closed
8 years ago
1
Error reading CIF
#65
mcquin
closed
8 years ago
0
Method getImageID is missing
#64
sebi06
opened
8 years ago
0
upgrade loci_tools.jar to 5.2.2
#63
0x00b1
closed
7 years ago
1
Upgrade loci_tools.jar to 5.2.2
#62
0x00b1
closed
7 years ago
1
Multi-Resolution API with BioFormats 5.2.1
#61
sebi06
opened
8 years ago
1
load 3d images
#60
mcquin
opened
8 years ago
0
Documentation on building from source
#59
jni
closed
7 years ago
1
Fixed a problem with OMEXML parsing metadata. Added Instrument and Objective information parsing from OMEXML.
#58
pskeshu
closed
7 years ago
0
moving rdr.setSeries() call up in read()
#57
abrazhe
closed
8 years ago
1
Unable to install using pip
#56
rchurt
closed
7 years ago
4
Unicode errors parsing metadata with Python 2.7
#55
tdsmith
closed
7 years ago
8
Fixes #53 rework basic_config so it uses loci.common.Log4jTools
#54
LeeKamentsky
closed
8 years ago
0
Error on "from bioformats import log4j"
#53
braymp
closed
8 years ago
3
Python3 support
#52
alimuldal
closed
8 years ago
10
python 3.5.1 and python-bioformats
#51
kraftlj
closed
7 years ago
2
Error reading file metadata
#50
ggirelli
opened
8 years ago
1
Error importing bioformats
#49
chsasank
closed
7 years ago
3
JavaException: Image plane too large.
#48
manuels
closed
8 years ago
2
Subimage Reading and Migrate to Bioformats 5.1.8
#47
XericZephyr
closed
8 years ago
2
Unclear problem with bioformats.get_omexml_metadata
#46
sebi06
opened
8 years ago
2
log4j output
#45
polarise
closed
7 years ago
1
Inefficient retrieval of WellSample attribute values
#44
hackermd
opened
8 years ago
5
Fixes #42 setup to automatically deploy on PyPI using Travis
#43
LeeKamentsky
closed
8 years ago
1
Add a deploy section to .travis.yml
#42
LeeKamentsky
closed
7 years ago
0
Merge pull request #1 from CellProfiler/acquisition_date
#41
hackermd
closed
9 years ago
0
Fixes #37 + test - the default xml was misformatted
#40
LeeKamentsky
opened
9 years ago
0
Fix bug that prevented setting values for "AcquiredDate" attribute
#39
hackermd
closed
9 years ago
7
Setting AcquiredTime only works for first image
#38
hackermd
opened
9 years ago
3
OMEXML strings generated by python-bioformats cannot be parsed
#37
hackermd
opened
9 years ago
0
Fixes codeblock for `pip` installation
#36
jakirkham
closed
9 years ago
0
README.rst: Add a badge for the Travis CI status.
#35
jakirkham
closed
9 years ago
1
Attempt to add Travis CI support
#34
jakirkham
closed
9 years ago
8
Updates docstring for `write_image`
#33
jakirkham
closed
9 years ago
0
Version info no longer works
#32
jakirkham
closed
9 years ago
6
Trying to save image results in JavaException
#31
jakirkham
opened
9 years ago
9
Updating docstring for `write_image`
#30
jakirkham
closed
9 years ago
3
javabridge problem - loci/common/RandomAccessInputStream
#29
sebi06
closed
9 years ago
5
Update to BioFormats 5.1.4
#28
sebi06
closed
9 years ago
2
python_bioformats works from inside PyCharm but does note from IPython notebook
#27
sebi06
closed
9 years ago
2
Question regarding the OME-TIFF writer
#26
sebi06
opened
9 years ago
3
AttributeError: 'ImageReader' object has no attribute 'rdr'
#25
tangji0318
closed
9 years ago
11
Accessing Metadata and chnage in API
#24
sebi06
closed
9 years ago
2
Reading metadata
#23
christofferaberg
opened
9 years ago
8
Python BioFormats does not work any more
#22
sebi06
closed
9 years ago
17
Memory error when iterating through large ND2 stack
#21
caspervdw
closed
9 years ago
9
Previous
Next