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Clinical-Genomics
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housekeeper
File data orchestrator
MIT License
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Fix session merge warnings
#161
seallard
closed
1 year ago
8
Refactor to pep 0585
#160
henrikstranneheim
closed
1 year ago
5
Add Ruff to pyproject.toml
#159
henrikstranneheim
closed
1 year ago
2
feat(black): Action
#158
henrikstranneheim
closed
1 year ago
2
feat(black): Update
#157
henrikstranneheim
closed
1 year ago
1
Refactor to PEP 0585
#156
henrikstranneheim
closed
1 year ago
0
Fix version file warnings
#155
seallard
closed
1 year ago
1
Fix deprecated joins warnings
#154
seallard
closed
1 year ago
1
Do not add directories to housekeeper
#153
ChrOertlin
closed
3 weeks ago
1
Remove models as properties
#152
seallard
closed
1 year ago
2
Extract database initialisation
#151
seallard
closed
1 year ago
1
Replace deprecated import
#150
seallard
closed
1 year ago
1
feat(ruff): Add
#149
henrikstranneheim
closed
1 year ago
1
Upgrade Python 3.11
#148
seallard
closed
1 year ago
2
Upgrade to Python 3.10
#147
seallard
closed
1 year ago
1
Upgrade to Python 3.9
#146
seallard
closed
1 year ago
1
Update instructions
#145
seallard
closed
1 year ago
1
Upgrade to Python 3.8
#144
seallard
closed
1 year ago
3
Upgrade to click 8
#143
seallard
closed
1 year ago
4
Allow for latest 1.4 version
#142
seallard
closed
1 year ago
2
refactor(moving log info to debug)
#141
ChrOertlin
closed
1 year ago
3
Upgrade sqlalchemy to 1.4
#140
seallard
closed
1 year ago
2
feat(isort): Add
#139
henrikstranneheim
closed
1 year ago
2
Include bundle by default
#138
islean
closed
1 year ago
5
Remove pytest fixture prefix snd name arg in decorator
#137
henrikstranneheim
closed
1 year ago
2
Include bundle by default
#136
islean
closed
1 year ago
0
Deprecate tag `archived_sample_sheet` and replace by `samplesheet`
#135
diitaz93
closed
1 year ago
16
Update CODEOWNERS
#134
pbiology
closed
1 year ago
1
Error when adding samples to bundle
#133
seallard
closed
1 year ago
7
Functionality for updating archiving/retrieval task ids
#132
islean
closed
1 year ago
2
removing wrongly assigned fastq files to sample bundle
#131
ChrOertlin
closed
1 year ago
0
feat(archiving) Add function to fetch all unarchived files
#130
islean
closed
1 year ago
2
Adding files to an included bundle that are already in the target.
#129
karlnyr
opened
1 year ago
6
housekeeper does not list file present in bundle
#128
seallard
closed
1 year ago
2
Fix forgotten code smells from issue 115
#127
islean
closed
1 year ago
2
Fix forgotten code smells from issue 115
#126
islean
closed
1 year ago
1
115 - include file in housekeeper-bundles by default
#125
islean
closed
1 year ago
8
feat(archiving) Adds functions for task interactions
#124
Vince-janv
closed
1 year ago
2
Remove log with database connection string
#123
seallard
closed
1 year ago
2
feat(Archiving) Adds functions interacting with the new Archive table
#122
Vince-janv
closed
1 year ago
3
Add missing module
#121
seallard
closed
1 year ago
1
feat(Archiving) Add new database table
#120
Vince-janv
closed
1 year ago
2
Fix(Tests) Restructured test folders
#119
Vince-janv
closed
1 year ago
1
Review how sessions are managed
#118
seallard
closed
3 weeks ago
1
Move and rename handler files
#117
seallard
closed
1 year ago
1
Add(Archive) Creates and archive table linked to files
#116
Vince-janv
closed
1 year ago
2
add CLI command to include file in bundle
#115
Vince-janv
closed
1 year ago
0
Remove models from base handler
#114
seallard
closed
1 year ago
1
Cleaner way of accessing methods from other handlers
#113
seallard
closed
3 weeks ago
1
Remove alchy
#112
seallard
closed
1 year ago
2
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