CoBrALab minc-bpipe-library issues

CoBrALab / minc-bpipe-library

Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines

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issues

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convert stage fails mysteriously if directory path contains "mnc"

#38 gdevenyi opened 3 years ago
0
Document/autogenerate missing MNI special priors

#37 gdevenyi opened 5 years ago
0
bpipe-batch.sh should check inputs

#36 gdevenyi opened 5 years ago
0
Add preflight stage

#35 gdevenyi opened 5 years ago
0
preallocated jobs for Niagara?

#34 gdevenyi opened 5 years ago
0
Add tool version database for tools used by minc-bpipe-library

#33 gdevenyi opened 5 years ago
0
Creating a Singularity recipe

#32 shots47s opened 5 years ago
21
add a license

#31 gkiar closed 5 years ago
1
Update README.md

#30 mkinnerup closed 6 years ago
0
Job loss due to file lock on scinet

#29 cfhammill closed 5 years ago
9
Document walltimes for stages

#28 gdevenyi opened 8 years ago
0
Re-implement variables in parameter file

#27 gdevenyi opened 8 years ago
2
Add denoise step to beast normalize

#26 gdevenyi closed 8 years ago
0
Update README.md

#25 egarza closed 8 years ago
1
Reorganize template selection to be more self-consistent

#24 gdevenyi closed 8 years ago
0
Update README.md

#23 egarza closed 8 years ago
0
Have to add minc-bpipe-library folder to path

#22 7jw9 opened 9 years ago
1
Modulatedvbm

#21 7jw9 closed 9 years ago
0
Changed extractvbm stage

#20 7jw9 closed 9 years ago
2
Test scinet implementation

#19 gdevenyi closed 9 years ago
2
Implement mincconvert

#18 gdevenyi closed 9 years ago
1
Implement QC Generation

#17 gdevenyi closed 8 years ago
1
Implement VBM stages

#16 gdevenyi closed 9 years ago
2
Implement different output directories

#15 gdevenyi opened 9 years ago
0
Implement CIVET pipeline step

#14 gdevenyi closed 2 years ago
0
Investigate ways to avoid re-slicing minc volumes during resample

#13 gdevenyi closed 9 years ago
1
Breakup library into a source file and a run file to allow for ''git pull'' updates to work

#12 gdevenyi closed 9 years ago
1
"Failure" at cutneckapplyautocrop

#11 raihaan closed 9 years ago
3
Generation of modern headmask

#10 gdevenyi closed 9 years ago
1
Investigate antsRegistration to replace mincANTS/ANTS

#9 gdevenyi closed 8 years ago
2
Discuss geometric corrections with Jamie.

#8 gdevenyi closed 8 years ago
1
Find defacing script

#7 gdevenyi closed 9 years ago
1
Implement nuyl normalize

#6 gdevenyi closed 9 years ago
0
Find documentation for different normalization techniques

#5 gdevenyi closed 9 years ago
1
Why not use autocrop when doing brain extraction?

#4 gdevenyi closed 9 years ago
6
Improve beast configuration

#3 gdevenyi closed 9 years ago
2
Investigate cutneck, find script

#2 raihaan closed 9 years ago
5
Target operations

#1 gdevenyi closed 9 years ago
11