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CoBrALab
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minc-bpipe-library
Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines
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convert stage fails mysteriously if directory path contains "mnc"
#38
gdevenyi
opened
3 years ago
0
Document/autogenerate missing MNI special priors
#37
gdevenyi
opened
5 years ago
0
bpipe-batch.sh should check inputs
#36
gdevenyi
opened
5 years ago
0
Add preflight stage
#35
gdevenyi
opened
5 years ago
0
preallocated jobs for Niagara?
#34
gdevenyi
opened
5 years ago
0
Add tool version database for tools used by minc-bpipe-library
#33
gdevenyi
opened
5 years ago
0
Creating a Singularity recipe
#32
shots47s
opened
5 years ago
21
add a license
#31
gkiar
closed
5 years ago
1
Update README.md
#30
mkinnerup
closed
6 years ago
0
Job loss due to file lock on scinet
#29
cfhammill
closed
5 years ago
9
Document walltimes for stages
#28
gdevenyi
opened
8 years ago
0
Re-implement variables in parameter file
#27
gdevenyi
opened
8 years ago
2
Add denoise step to beast normalize
#26
gdevenyi
closed
8 years ago
0
Update README.md
#25
egarza
closed
8 years ago
1
Reorganize template selection to be more self-consistent
#24
gdevenyi
closed
8 years ago
0
Update README.md
#23
egarza
closed
8 years ago
0
Have to add minc-bpipe-library folder to path
#22
7jw9
opened
9 years ago
1
Modulatedvbm
#21
7jw9
closed
9 years ago
0
Changed extractvbm stage
#20
7jw9
closed
9 years ago
2
Test scinet implementation
#19
gdevenyi
closed
9 years ago
2
Implement mincconvert
#18
gdevenyi
closed
9 years ago
1
Implement QC Generation
#17
gdevenyi
closed
8 years ago
1
Implement VBM stages
#16
gdevenyi
closed
9 years ago
2
Implement different output directories
#15
gdevenyi
opened
9 years ago
0
Implement CIVET pipeline step
#14
gdevenyi
closed
2 years ago
0
Investigate ways to avoid re-slicing minc volumes during resample
#13
gdevenyi
closed
9 years ago
1
Breakup library into a source file and a run file to allow for ''git pull'' updates to work
#12
gdevenyi
closed
9 years ago
1
"Failure" at cutneckapplyautocrop
#11
raihaan
closed
9 years ago
3
Generation of modern headmask
#10
gdevenyi
closed
9 years ago
1
Investigate antsRegistration to replace mincANTS/ANTS
#9
gdevenyi
closed
8 years ago
2
Discuss geometric corrections with Jamie.
#8
gdevenyi
closed
8 years ago
1
Find defacing script
#7
gdevenyi
closed
9 years ago
1
Implement nuyl normalize
#6
gdevenyi
closed
9 years ago
0
Find documentation for different normalization techniques
#5
gdevenyi
closed
9 years ago
1
Why not use autocrop when doing brain extraction?
#4
gdevenyi
closed
9 years ago
6
Improve beast configuration
#3
gdevenyi
closed
9 years ago
2
Investigate cutneck, find script
#2
raihaan
closed
9 years ago
5
Target operations
#1
gdevenyi
closed
9 years ago
11