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CoBrALab
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optimized_antsMultivariateTemplateConstruction
A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
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Add code to save the input file
#53
gdevenyi
opened
1 year ago
0
Unknown problem between twolevel_modelbuild.sh and modelbuild.sh for duplicate filename checking
#52
gdevenyi
closed
1 year ago
1
Running optimized_antsMultivariateTemplateConstruction without a cluster
#51
hgellersen
closed
1 year ago
2
Split initial average and modelbuild average options
#50
gdevenyi
opened
1 year ago
0
Implement python-based averaging
#49
gdevenyi
closed
1 year ago
3
Refine histogram matching
#48
gdevenyi
closed
1 year ago
1
"Clean up" mode
#47
araikes
opened
1 year ago
3
Audit jobs/logs/qbatch directory for runs
#46
gdevenyi
closed
1 year ago
1
Wrote new python script to compute averages from a set of images to r…
#45
Gab-D-G
closed
1 year ago
3
Fix __invocation
#44
gdevenyi
closed
1 year ago
1
Integrate averager
#43
Gab-D-G
closed
2 years ago
1
Provide docs and/or script to go to/from common/reference space
#42
gdevenyi
closed
1 year ago
1
Implement Common (reference) space resampling
#41
gdevenyi
opened
2 years ago
5
Make bootstrapping reuse test more explicit
#40
gdevenyi
closed
2 years ago
1
Implement twolevel wrapper around modelbuild.sh
#39
gdevenyi
closed
2 years ago
2
Store per-run logs in datetime stamped directory similar to jobs/
#38
gdevenyi
closed
2 years ago
1
Document "classical" DBM
#37
gdevenyi
closed
2 years ago
1
Expose many more qbatch options
#36
gdevenyi
opened
2 years ago
0
Break nlin stages into affine+nlin stages
#35
gdevenyi
opened
2 years ago
0
Check for resampled starting target (after resolution change) is properly used for starting target
#34
gdevenyi
closed
1 year ago
1
Implement twolevel modelbuilding
#33
gdevenyi
closed
2 years ago
2
Off-by-one error in final output symlink for dbm
#32
araikes
closed
2 years ago
8
Implement DBM
#31
gdevenyi
closed
2 years ago
0
Check for duplicate filenames
#30
gdevenyi
closed
2 years ago
1
Add ability to specify a gradient step schedule
#29
gdevenyi
closed
2 years ago
0
Further logging improvement
#28
gdevenyi
closed
2 years ago
0
Store last-executed command line and print warning if newly executed differs
#27
gdevenyi
opened
2 years ago
0
Improve informational outputs and logging
#26
gdevenyi
closed
2 years ago
0
Add ability to specify resolution of starting average
#25
gdevenyi
closed
2 years ago
0
Remove debug exit
#24
gdevenyi
closed
2 years ago
0
Remove repeat application of COM alignment, doesn't improve things
#23
gdevenyi
closed
2 years ago
0
Allow explicit specification of resolution of initial average
#22
gdevenyi
closed
2 years ago
0
Add proper output on what stage is happening
#21
gdevenyi
closed
2 years ago
0
Add center-of-mass initialization of template
#20
gdevenyi
closed
2 years ago
1
nlin-only stage should initialize with prior stage affine if available
#19
gdevenyi
closed
2 years ago
0
Implement custom iteration numbers for stages
#18
gdevenyi
closed
2 years ago
2
Audit according to https://clig.dev/
#17
gdevenyi
opened
2 years ago
0
DBM postprocessing
#16
gdevenyi
opened
2 years ago
6
preflight check
#15
gdevenyi
closed
2 years ago
1
Introduce proper averaging of affine components using matrix algebra
#14
gdevenyi
closed
1 year ago
3
Introduce scaling for affine transforms during modelbuild
#13
gdevenyi
closed
1 year ago
0
Com template initiation
#12
Gab-D-G
closed
2 years ago
2
Implemented a new python script for computing image averages more eff…
#11
Gab-D-G
closed
2 years ago
0
Improve averaging
#10
Gab-D-G
closed
3 years ago
2
Examine "model guided masking"
#9
gdevenyi
opened
3 years ago
0
Offer robust implementation for scan averaging
#8
gdevenyi
closed
1 year ago
2
Improve robustness with transformation averaging before shape update
#7
gdevenyi
closed
1 year ago
4
Add --block option for blocking job submission
#6
Gab-D-G
closed
3 years ago
1
Allow for a gradient step schedule for modelbuilding
#5
gdevenyi
closed
2 years ago
3
(optional) initial COM alignment before initial template construction
#4
gdevenyi
closed
2 years ago
1
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