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Defense-Circuits-Lab
/
findmycells
An end-to-end bioimage analysis pipeline with state-of-the-art tools for non-coding experts
https://defense-circuits-lab.github.io/findmycells/
GNU General Public License v3.0
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cellpose update
#51
KonKob
opened
1 month ago
0
Deepflash2 versioning error
#50
KonKob
closed
1 month ago
0
No quantification is carried out
#49
NataliaFavila
opened
8 months ago
1
implemented docs for developers
#48
KonKob
closed
10 months ago
0
Bug/save and keep project
#47
KonKob
closed
10 months ago
0
Implementing new functionalities
#46
KonKob
closed
10 months ago
0
Saving doesn't keep the project
#45
KonKob
closed
10 months ago
0
Transfer of findmycells projects between operating systems
#44
KonKob
closed
10 months ago
1
Feature/quantification strategy relative counts
#43
KonKob
closed
11 months ago
0
Gui not being displayed
#42
NataliaFavila
closed
11 months ago
2
updated tutorial notebooks
#41
KonKob
closed
1 year ago
0
updated ROI gif
#40
KonKob
closed
1 year ago
0
Update README.md
#39
KonKob
closed
1 year ago
0
Feature/google colab support
#38
KonKob
closed
1 year ago
0
added WindowsPath type hint
#37
KonKob
closed
1 year ago
0
run_cell_in_gui_tutorial
#36
KonKob
closed
1 year ago
0
added_ROI_gif
#35
KonKob
closed
1 year ago
0
Update settings.ini
#34
KonKob
closed
1 year ago
0
Update/documentation
#33
KonKob
closed
1 year ago
0
fixes #31
#32
KonKob
closed
1 year ago
0
Remove stitching artefacts only implemented for black pixels
#31
KonKob
closed
1 year ago
0
fixes #21
#30
KonKob
closed
1 year ago
0
fix #28
#29
KonKob
closed
1 year ago
0
czi-file shape behaves differently across different imaging conditions
#28
KonKob
closed
1 year ago
0
Fix/shutil move
#27
KonKob
closed
1 year ago
0
fixes #19
#26
KonKob
closed
1 year ago
0
fixes #22
#25
KonKob
closed
1 year ago
0
make unzipped folders containing .roi files usable!
#24
KonKob
closed
1 year ago
1
Add Google Colab support
#23
KonKob
closed
1 year ago
1
Installation of sample dataset fails
#22
KonKob
closed
1 year ago
2
Setting a slider range in preprocessing step causes fail in segmentation step
#21
KonKob
closed
1 year ago
2
Update and correct documentation
#20
KonKob
closed
1 year ago
5
Migrate projects between computers
#19
KonKob
closed
1 year ago
3
Added support for operating systems
#18
KonKob
closed
1 year ago
0
Update dev
#17
KonKob
closed
1 year ago
0
added support for windowspaths
#16
KonKob
closed
1 year ago
0
corrected typos
#15
KonKob
closed
1 year ago
0
set imageio version to 2.21.3
#14
KonKob
closed
1 year ago
0
asserts for roi-file > 2 coordinates as a polygon roi cant be drawn f…
#13
KonKob
closed
1 year ago
0
str attributes in shutil.move
#12
KonKob
closed
1 year ago
0
Preprocessing: Crop stitching artefacts before Crop to ROI before Convert into 8-bit format throws error
#11
KonKob
closed
1 year ago
1
Path object cant be moved by shutil
#10
KonKob
closed
1 year ago
3
preprocessing specs.py TYPO in variable name
#9
KonKob
closed
1 year ago
0
Assert for validity of .roi files
#8
KonKob
closed
1 year ago
2
Update segmentation path
#7
KonKob
closed
1 year ago
1
adding Windows compatibility
#6
KonKob
closed
1 year ago
2
set dependencie versions: imageio, scikit-image
#5
KonKob
closed
1 year ago
3
Major refactoring - finally completed
#4
DennisDoll
closed
1 year ago
0
Major refactoring + implementation of interfaces (API + GUI)
#3
DennisDoll
closed
1 year ago
0
Major refactoring continued on windows
#2
DennisDoll
closed
1 year ago
0
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