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DendrouLab
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panpipes-tutorials
tutorials to run panpipes
BSD 3-Clause "New" or "Revised" License
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Incorporate scib metrics into the integration tutorial
#51
Lilly-May
closed
4 months ago
0
Error in the pre-filled Preprocess pipline.yml file
#50
andrewkcleeuc
opened
5 months ago
0
Update pipeline.yml
#49
bio-la
closed
6 months ago
0
Conda env correction
#48
giuliaelgarcia
opened
6 months ago
0
Add conda environment information to tutorials
#47
Lilly-May
opened
6 months ago
0
correct qc_gene_list_mouse
#46
giuliaelgarcia
closed
6 months ago
0
Update filtering_data_with_panpipes.md
#45
bio-la
closed
6 months ago
0
Change ATAC normalization to TFIDF-signac in preprocess tutorial
#44
Lilly-May
closed
6 months ago
0
Update pipeline yamls
#43
Lilly-May
closed
6 months ago
0
Cleanup preprocess tutorial pipeline.yml
#42
Lilly-May
closed
6 months ago
0
Update Integrating_data_with_panpipes.md
#41
giuliaelgarcia
closed
6 months ago
0
Fix input files
#40
SarahOuologuem
closed
6 months ago
0
adding webpages for config files
#39
bio-la
closed
6 months ago
2
Update pipeline.yml
#38
bio-la
closed
7 months ago
0
update deconvolution tutorial yaml
#37
SarahOuologuem
closed
7 months ago
0
Update pipeline.yml outline in tutorial
#36
Lilly-May
closed
6 months ago
1
Update ingestion pipeline.yml for tutorials
#35
Lilly-May
closed
7 months ago
0
clean up ingestion yml tutorials to align with new ingestion config file
#34
bio-la
closed
7 months ago
0
Created the troubleshooting.md file
#33
giuliaelgarcia
closed
7 months ago
0
info to add to troubleshooting
#32
giuliaelgarcia
opened
7 months ago
0
Visualisation Issue 4
#31
giuliaelgarcia
opened
7 months ago
1
Visualisation tutorial error 3
#30
giuliaelgarcia
closed
6 months ago
0
Visualisation tutorial issue 2
#29
giuliaelgarcia
closed
6 months ago
0
Visualisation tutorial error
#28
giuliaelgarcia
closed
6 months ago
0
updated pipeline.yml for ingestion tutorial
#27
giuliaelgarcia
closed
7 months ago
0
Clustering tutorial issue
#26
giuliaelgarcia
closed
6 months ago
0
issue on multimodal integration tutorial
#25
giuliaelgarcia
closed
7 months ago
1
fixes to ingestion tutorial #2
#24
bio-la
closed
6 months ago
0
fixes to ingestion tutorial #1
#23
bio-la
opened
7 months ago
0
update links on README github
#22
bio-la
closed
6 months ago
0
Minor additions to the first ingestion tutorial
#21
Lilly-May
closed
7 months ago
0
Language and structure improvements for the first ingestion tutorial
#20
Lilly-May
closed
8 months ago
0
Ingesting complex data tutorial
#19
wlason
opened
10 months ago
0
Panpipes ingest multmodal (CITE-SEQ + VDJ) data from cellranger multi outputs
#18
deevdevil88
closed
10 months ago
0
Mouse ingestion tutorial
#17
SarahOuologuem
closed
10 months ago
0
Visualization tutorial
#16
SarahOuologuem
closed
10 months ago
0
Ingesting CITEseq data produced by cellranger
#15
bio-la
closed
10 months ago
1
add full list tutorials here
#14
bio-la
closed
10 months ago
0
Update requirements.txt
#13
crichgriffin
closed
10 months ago
0
readthedocs
#12
SarahOuologuem
closed
10 months ago
1
ingestion tutorial
#11
bio-la
closed
11 months ago
0
Error with jaxlib
#10
TuongViDang
closed
11 months ago
2
Fc clustering
#9
bio-la
closed
1 year ago
0
Add deconvolution tutorial
#8
bio-la
closed
1 year ago
0
rename images to remove :
#7
crichgriffin
closed
1 year ago
0
Fc contributing
#6
bio-la
closed
1 year ago
0
Spatial intro
#5
bio-la
closed
1 year ago
0
Fixing links, and some wording changes
#4
crichgriffin
closed
1 year ago
1
merge main into spatial
#3
crichgriffin
closed
1 year ago
0
Update pipeline.yml
#2
crichgriffin
closed
1 year ago
0
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