issues
search
DiltheyLab
/
HLA-LA
Fast HLA type inference from whole-genome data
GNU General Public License v3.0
120
stars
40
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
How to update PRG_MHC_GRCh38_withIMGT data package?
#68
TonyLupara
opened
2 years ago
4
Do you have HLA-LA* v1.2 pipeline?
#67
PavitaKae
closed
11 months ago
1
Is it possible to declare multiple CRAM files?
#66
kantale
closed
11 months ago
1
No longer working for me -- terminate called after throwing an instance of 'std::runtime_error'
#65
cariaso
closed
11 months ago
1
IMGT version?
#64
serge2016
opened
2 years ago
11
Cram files - [main_samview] fail to read the header from "-".
#63
juliandwillett
closed
2 years ago
0
Picard errors
#62
juliandwillett
closed
2 years ago
1
Error: Have found no compatible reference specifications
#61
santhoshnh
opened
2 years ago
11
extraction file for custom reference
#60
raval91
closed
11 months ago
1
bamtools breaking change
#59
cariaso
closed
11 months ago
3
error when extracting unmapped reads
#58
wt2015-github
closed
11 months ago
1
Bug: samtools version 1.12 is considered < 1.3, so cause error
#57
wt2015-github
closed
11 months ago
1
Does it work for ONT 1D data?
#56
wt2015-github
closed
11 months ago
1
Raw nanopore reads vs CANU-corrected nanopore reads?
#55
danledinh
opened
3 years ago
1
support for non-paired short reads?
#54
droeatumn
closed
11 months ago
1
Is this tool able to type MICA
#53
prmac
closed
11 months ago
1
Slow tests
#52
Stikus
opened
3 years ago
6
prepate graph
#51
allteaser
opened
3 years ago
1
Add preparation of index graph to main script
#50
jafors
closed
3 years ago
1
About memory used
#49
yubau1112
opened
3 years ago
3
segmentation fault
#48
boyangzhao
opened
3 years ago
1
bamtools installation conflicts with HLA-LA makefile settings
#47
boyangzhao
closed
11 months ago
7
samtools idxstats bam header not right
#46
masen1991
closed
11 months ago
3
Allowing for non-alphanumeric characters in sample IDs
#45
tinyheero
closed
11 months ago
1
Update devel branch integrating changes in master
#44
AlexanderDilthey
opened
3 years ago
0
Typing of HLA-DP Locus
#43
tinyheero
closed
3 years ago
1
BWA error
#42
Leon-Bichmann
opened
4 years ago
5
Installing HLA*LA with bug
#41
masen1991
closed
3 years ago
1
Installation via conda fails
#40
t-carroll
closed
4 years ago
1
Graph path for Conda install
#39
NTNguyen13
closed
3 years ago
3
Very slow process (5 hours)
#38
lmtani
opened
4 years ago
3
Discordant results from the same person.
#37
kimjr89
opened
4 years ago
1
User-defined path to graph directory
#36
jafors
closed
3 years ago
4
User-defined path to graph directory
#35
jafors
closed
3 years ago
8
when I Compilation I get Error
#34
yubau1112
closed
4 years ago
0
if I have fastq paired read data, what should i do?
#33
PavitaKae
closed
4 years ago
1
Why my NA12878 test result is not same with NA12878_example_output_G.txt?
#32
PavitaKae
closed
3 years ago
4
bamtools installation problem
#31
cjieming2
closed
11 months ago
3
installation prereq
#30
cjieming2
closed
4 years ago
0
Improvements to Documentation
#29
DarioS
closed
4 years ago
3
Sample names with strange characters
#28
hcurley2
closed
4 years ago
1
A problem about reference?
#27
maolingfengZJU
closed
4 years ago
10
Question about perfectG value and running on HPC cluster
#26
jbreynier
closed
4 years ago
1
A problem when test pacbio data
#25
Huangpq2019
closed
4 years ago
1
No compatible reference
#24
sethsh7
closed
4 years ago
1
Issue with bowtie2
#23
valentinShimansky
closed
5 years ago
5
execution not successful
#22
jfass
closed
5 years ago
1
Performance issue
#21
boris-milicevic
closed
4 years ago
1
I cannot index the graph
#20
boris-milicevic
closed
5 years ago
3
Fix if/elsif block to permit usage of SamToFastq.jar or picard-tools.
#19
jlrgraham23
closed
5 years ago
1
Previous
Next