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EcoJulia
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Microbiome.jl
For analysis of microbiome and microbial community data
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Improve efficiency of commjoin for large matrices
#144
kescobo
opened
3 months ago
0
Selecting samples by vector of strings preserves order of original profile
#143
kescobo
opened
3 months ago
0
Adopt views framework from SpatialEcology
#142
kescobo
closed
11 months ago
3
Replace current metadata structure with DataAPI
#141
kescobo
opened
11 months ago
0
Remove deprecation and bump version
#140
kescobo
closed
1 year ago
0
Get updates
#139
kescobo
closed
1 year ago
0
Allow MultivariateStats v0.10
#138
kescobo
closed
1 year ago
1
Faster methods for building metadata with subsets of fields
#137
kescobo
closed
1 year ago
0
Add Downstream tests for MicrobiomeAnalysis.jl
#136
kescobo
opened
2 years ago
0
Improve speed of `shannon` and `ginisimpson`
#135
barucden
closed
2 years ago
1
Add `by` option for `filter` to enable filtering on samples, matrix, etc.
#134
kescobo
opened
2 years ago
0
Juliacon Tutorial
#133
kescobo
closed
2 years ago
1
Juliacon tutorial outline
#132
anikaluo
closed
2 years ago
3
Code demo for JuliaCon presentation
#131
annelle-abatoni
closed
2 years ago
1
JuliaCon presentation
#130
kescobo
closed
1 year ago
4
remove duplicate method
#129
kescobo
closed
2 years ago
0
mantel test
#127
EvoArt
closed
2 years ago
2
Remove axis indices and nameddims
#126
kescobo
closed
2 years ago
0
Metabolites
#125
kescobo
closed
2 years ago
0
add metabolite feature
#124
kescobo
closed
2 years ago
0
Printing an empty comm profile throws error
#123
kescobo
opened
2 years ago
0
Add Metabolite <: AbstractFeature
#122
kescobo
closed
2 years ago
0
Retest
#121
kescobo
closed
2 years ago
0
add get method for whole community, and default for default
#120
kescobo
closed
2 years ago
0
dont use rand in docs
#119
kescobo
closed
2 years ago
0
update news
#118
kescobo
closed
2 years ago
0
Use Diversity.jl for alpha and beta diversity
#117
kescobo
opened
2 years ago
0
Update NEWS.md
#116
kescobo
closed
2 years ago
0
Joss review fixes
#115
kescobo
closed
2 years ago
1
documentation for `Microbiome.hasrank` and `Microbiome.Taxon`
#114
aguang
closed
2 years ago
0
support for biom format?
#113
aguang
opened
2 years ago
3
vignette for data import
#112
aguang
closed
2 years ago
1
Can't run sample types docs s2 example
#111
aguang
closed
2 years ago
5
Dependencies [minor issue]
#110
adRn-s
closed
2 years ago
4
Various fixes to tutorial
#109
kescobo
closed
2 years ago
0
SparseArrays
#108
vanjakle
closed
2 years ago
1
Dictionaries.jl in Microbiome.jl
#107
vanjakle
closed
2 years ago
1
change group for BiobakeryUtils downstream tests
#106
kescobo
closed
2 years ago
0
add missing dois
#105
kescobo
closed
2 years ago
0
some readme typos
#104
kescobo
closed
2 years ago
0
Add downstream package tests
#103
kescobo
closed
2 years ago
1
EcoJulia transfer
#102
kescobo
closed
2 years ago
0
Figures
#101
kescobo
closed
2 years ago
0
Manuscript
#100
annelle-abatoni
closed
2 years ago
4
manuscript edits/suggestions
#99
anikaluo
closed
2 years ago
1
fix branch in gha-docs
#98
kescobo
closed
2 years ago
0
Feature strings
#97
kescobo
closed
2 years ago
0
use docs deploy action
#96
kescobo
closed
2 years ago
0
Documenter broken - version incompatibility
#95
kescobo
closed
2 years ago
0
Issue jubilee
#94
kescobo
closed
2 years ago
0
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