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EdinburghGenomics
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pyclarity-lims
Python interface to the GenoLogics LIMS server via its REST API.
MIT License
11
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Python >= 3.9 does not have xml.etree.ElementTree.getchildren() method
#59
rich7409
opened
1 year ago
0
Continued support for this repo
#58
mwhamgenomics
opened
2 years ago
4
Fix AttributeError in Lims.get
#57
kmendler
closed
2 years ago
1
Added name attribute to ReagentType.
#56
rich7409
closed
3 years ago
1
Documentation on setting nextstep
#55
csawye01
opened
4 years ago
1
Change rework-step value's type to match the API requirement
#54
tcezard
closed
5 years ago
0
StepAction rework-step take a Step
#53
tcezard
closed
5 years ago
0
Add creation of input-output-map entry
#52
tcezard
closed
5 years ago
1
get_batch type and download binary
#51
tcezard
closed
5 years ago
1
all_inputs documentat - list vs dict_values
#50
EGCGDanForth
closed
5 years ago
0
add support for binary files in lims.get_file_content
#49
tcezard
closed
5 years ago
1
Create batch function
#48
tcezard
closed
5 years ago
1
Implement lims.create_batch
#47
tcezard
closed
5 years ago
1
Retrieval of UDFs
#46
dbarrell
closed
5 years ago
1
Fix bug in output_per_input, add tests
#45
tcezard
closed
5 years ago
1
Required Reagent Kit Tracking
#44
dbarrell
opened
5 years ago
3
Bug and doc fixes
#43
tcezard
closed
5 years ago
1
Import from genologics
#42
tcezard
closed
5 years ago
1
Create pools
#41
tcezard
closed
5 years ago
1
Pooling samples
#40
dbarrell
closed
5 years ago
6
Documentation - make it clear you can't set UDF on a process, only the associated step
#39
tbooth
closed
5 years ago
0
result_files()[source]¶ documentation incorrect
#38
EGCGDanForth
closed
5 years ago
1
outputs_per_input method - input artifact variable not clear
#37
EGCGDanForth
closed
5 years ago
0
next_actions only if condition
#36
dbarrell
closed
6 years ago
2
Fix FutureWarning
#35
dbarrell
closed
6 years ago
1
Lims.put_batch does not support batch file updates.
#34
jonathandixon
closed
5 years ago
0
Start_index and depagination
#33
tcezard
closed
6 years ago
3
Lims _get_instances() returns empty array when start_index is set.
#32
jonathandixon
closed
6 years ago
1
Refactor/doc improvements
#31
mwhamgenomics
closed
6 years ago
3
Lims.get_reagent_types is defined twice
#30
mwhamgenomics
closed
5 years ago
0
Unable to read some UDFs
#29
dbarrell
closed
6 years ago
2
Integration tests included in install
#28
mwhamgenomics
closed
6 years ago
0
Step.available_programs FutureWarning
#27
dbarrell
closed
6 years ago
3
call get() on Step before advancing
#26
katieemelianova
closed
6 years ago
3
Exception will attempting to advance() a step
#25
tbooth
closed
6 years ago
3
Fix clear function
#24
tcezard
closed
6 years ago
1
UdfConfig presets clear method clears the entire UdfConfig object
#23
Rubyj
closed
6 years ago
5
fixing issue for python 2.7 where timezone is - GMT and not + GMT
#22
Rubyj
closed
6 years ago
3
Issue with queued artifacts
#21
Rubyj
closed
6 years ago
7
Integration tests
#20
tcezard
closed
6 years ago
1
Queued artifacts
#19
tcezard
closed
6 years ago
5
Queue Class does not have an easily acessible "queue-time" member variable
#18
Rubyj
closed
6 years ago
2
Fixactions
#17
tcezard
closed
6 years ago
2
Parse pools in a Step as dict
#16
tcezard
closed
6 years ago
3
See if we want to port PR #204
#15
tcezard
opened
6 years ago
0
UDFDictionary require Date object when type is date
#14
tcezard
opened
6 years ago
0
Add replicates to step
#13
tcezard
closed
6 years ago
5
Documentation
#12
tcezard
closed
6 years ago
12
File encoding and CRLFs
#11
mwhamgenomics
closed
7 years ago
2
Support for different file encodings
#10
mwhamgenomics
closed
7 years ago
0
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