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ExposuresProvider
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cam-pipeline
Data loading pipeline for CAM database
https://exposuresprovider.github.io/cam-pipeline/
MIT License
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update missing-biolink-term check to exclude 'entity'
#51
balhoff
closed
3 years ago
0
Fixing missing mappings due to biolink modeling changes.
#50
balhoff
closed
3 years ago
1
adding predicates.tsv post processing/formatting
#49
jdr0887
closed
3 years ago
0
revise makefile to handle Reactome models in master branch
#48
balhoff
closed
3 years ago
2
Update Makefile
#47
rajshruti18
closed
3 years ago
0
Update missing-biolink-relation query to new mapping style.
#46
balhoff
closed
3 years ago
0
Update Makefile
#45
rajshruti18
closed
3 years ago
0
Add mapping from new gene-to-gene chain to biolink
#44
balhoff
closed
3 years ago
0
Issue 27 jenkins
#43
Shalsh23
closed
3 years ago
0
Add target to extract predicates between all pairs of source and target
#42
Shalsh23
closed
3 years ago
1
Fix for issue #40
#41
rajshruti18
closed
3 years ago
0
add property chain to infer gene-to-gene relations
#40
balhoff
closed
3 years ago
1
implement SPARQL query to support predicates service
#39
balhoff
closed
3 years ago
2
Use memory settings for robot and arq
#38
balhoff
closed
3 years ago
0
Fix typo
#37
balhoff
closed
3 years ago
0
Update from master
#36
balhoff
closed
3 years ago
0
Stop reasoning over Biolink slots
#35
balhoff
closed
3 years ago
0
add PR ontology to imports
#34
balhoff
opened
3 years ago
2
Issue 31
#33
Shalsh23
closed
3 years ago
0
Fix for issue #31
#32
rajshruti18
closed
3 years ago
0
create workflow step to assert any Uniprot identifier is subclass of protein
#31
balhoff
closed
3 years ago
3
Create query wrt issue#28
#30
rajshruti18
closed
3 years ago
1
Create query wrt issue#28
#29
rajshruti18
closed
3 years ago
0
add content reports to pipeline
#28
balhoff
closed
3 years ago
2
Set up Jenkins job to build pipeline
#27
balhoff
closed
3 years ago
2
make sure Uniprot IDs are properly mapped onto Reactome instances
#26
balhoff
opened
3 years ago
3
Fix various issues with Makefile.
#25
balhoff
closed
3 years ago
2
Revise handling of biolink to ontology mappings.
#24
balhoff
closed
3 years ago
0
Use ro-base.
#23
balhoff
closed
3 years ago
0
Avoid "argument list too long" problem
#22
balhoff
closed
3 years ago
0
adding target for slot_mappings and formatting ontologies-merged
#21
jdr0887
closed
4 years ago
0
Commit slot-mappings query.
#20
balhoff
closed
4 years ago
1
adding quiet arg to arq commands
#19
jdr0887
closed
4 years ago
0
evaluate other triplestores
#18
balhoff
closed
8 months ago
2
Better notebook
#17
gaurav
closed
4 years ago
0
Add shortcut slot_uri mapping to makefile
#16
balhoff
closed
4 years ago
3
Add README.
#15
balhoff
closed
4 years ago
0
Add multiline labels and improve output
#14
gaurav
closed
4 years ago
0
Prettier visualization
#13
gaurav
closed
4 years ago
0
NCBI genes should have class SO:gene
#12
balhoff
closed
4 years ago
0
Unify usage of Uniprot and NCBI Gene identifiers
#11
balhoff
closed
4 years ago
0
Ensure CTD PMIDs use same relation structure as GO-CAMs
#10
balhoff
opened
4 years ago
2
Connect unmapped MeSH terms to upper level CHEBI term
#9
balhoff
closed
4 years ago
1
Add rule to directly connect REACTO instances to their Uniprot class
#8
balhoff
closed
4 years ago
0
Connect biolink terms directly to instances
#7
balhoff
closed
4 years ago
1
Add bridge from HPO to UPHENO
#6
balhoff
closed
4 years ago
1
Implement mappings from ontology terms to BioLink model concepts
#5
balhoff
closed
4 years ago
3
Ensure UberGraph is a superset of go-lego
#4
balhoff
closed
4 years ago
2
Update CTD code to load models into database
#3
balhoff
closed
4 years ago
1
Create initial Makefile pipeline to load CAMs into Blazegraph
#2
balhoff
closed
4 years ago
1
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