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ExposuresProvider
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cam-pipeline
Data loading pipeline for CAM database
https://exposuresprovider.github.io/cam-pipeline/
MIT License
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Make branch kg-tsv run on Sterling
#100
gaurav
closed
1 year ago
1
Unable to import ncbitaxon taxslim-disjoint-over-in-taxon.owl
#99
gaurav
closed
1 year ago
4
Add qualifiers to the CAM-KP TSV output
#98
gaurav
closed
1 year ago
0
Convert the CAM-KP knowledge graph into TSV for import into Orion
#97
gaurav
closed
1 year ago
0
Add tests for improving RO-to-Biolink mappings
#96
gaurav
opened
1 year ago
0
map RO terms to qualified Biolink predicates
#95
balhoff
opened
1 year ago
2
Write tests for cam-pipeline
#94
gaurav
closed
4 months ago
1
Investigate why some identifiers aren't being normalized and report to NodeNorm
#93
gaurav
opened
1 year ago
1
`biolink:same_as` connects Automat CAM-KP nodes with themselves
#92
gaurav
opened
1 year ago
1
Make sure that it responds correctly to all the integration tests in CAM-KP-API repository
#91
gaurav
opened
1 year ago
1
Deploy Automat-CAM-KP to RENCI and ITRB
#90
gaurav
closed
1 month ago
9
build ontology separately
#89
balhoff
opened
1 year ago
2
Produce KGX files for import into ORION for eventual hosting on Plater
#88
gaurav
closed
7 months ago
1
Remove ubergraph:acts_upstream_of_o_enabled_by from triplestore
#87
gaurav
closed
1 year ago
1
Remove unnecessary slot mappings for
#86
gaurav
opened
1 year ago
1
Update to Biolink 3
#85
gaurav
closed
11 months ago
0
Improve debugging of cam-pipeline on Kubernetes
#84
gaurav
closed
1 year ago
0
Blazegraph load seems to stall loading 81 GB CTD inferences
#83
balhoff
closed
1 year ago
2
Add support for Biolink 3 and qualifiers
#82
gaurav
opened
1 year ago
0
Rename journal to filename containing date
#81
balhoff
closed
7 months ago
2
Two unexpected changes in cam-pipeline-2022oct18
#80
gaurav
opened
1 year ago
0
Fix example 3 on the wiki page
#109
gaurav
opened
1 year ago
0
Move the Blazegraph server to ITRB
#79
gaurav
closed
7 months ago
1
Add Kubernetes CronJob file to repo
#78
gaurav
closed
1 year ago
1
Add provenance for SIGNOR
#77
gaurav
closed
1 year ago
2
Insert triple tagging models as GO-CAM or SIGNOR
#76
balhoff
opened
2 years ago
2
Develop workflow for running build CronJob in kubernetes and deploy result
#75
balhoff
closed
7 months ago
4
Refresh import ontology to use current base files where available
#74
balhoff
closed
2 years ago
1
SPARQL reports are running out of memory with larger dataset
#73
balhoff
closed
1 month ago
3
Use materializer for computing inferences.
#72
balhoff
closed
1 year ago
0
Update delete-non-production-models.ru
#71
rajshruti18
closed
2 years ago
0
model with "development" state appears in database
#70
balhoff
opened
2 years ago
0
Use biolink-model 2.
#69
balhoff
closed
2 years ago
0
Update pipeline-tools version.
#68
balhoff
closed
3 years ago
0
Specify biolink version.
#67
balhoff
closed
3 years ago
0
hardcode biolink-model version to match application
#66
balhoff
closed
3 years ago
1
Update owl-missing-biolink-relation.rq
#65
balhoff
closed
3 years ago
0
Too many classes are being put under gene.
#64
balhoff
closed
3 years ago
0
Update to new linkml namespace.
#63
balhoff
closed
3 years ago
0
Use canonical_record to map any types, not just Uniprot.
#62
balhoff
closed
3 years ago
0
Fix for #59
#61
rajshruti18
closed
3 years ago
0
Fix for #59
#60
rajshruti18
closed
3 years ago
0
add Gene category for NCBI genes used in mapping rules
#59
balhoff
closed
3 years ago
0
Fix for #57
#58
rajshruti18
closed
3 years ago
0
change ':' to '/' in ncbigene identifiers
#57
balhoff
closed
3 years ago
0
post products so others can download
#56
balhoff
opened
3 years ago
2
Filter for triples from reactome model
#55
Shalsh23
closed
3 years ago
0
Filter for bl:Entity class
#54
Shalsh23
closed
3 years ago
4
Update to fix problem with swrl variable incorrectly becoming an OWL individual.
#53
balhoff
closed
3 years ago
0
Remove accidental pipe.
#52
balhoff
closed
3 years ago
0
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