issues
search
Gaius-Augustus
/
BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
Other
334
stars
80
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
error: No spliced alignments were created by Spaln
#793
karthickbrlab
closed
2 months ago
3
Very low number of genes predicted
#792
camille-cornet
closed
2 months ago
2
Failed to create directory!
#791
karthickbrlab
closed
3 months ago
3
Failed at optimize_augutus.pl
#790
kwantn
opened
3 months ago
1
Prothint - Error: Inflate error
#789
tanpham15
opened
3 months ago
1
version 3.0.8 docker: etraining error
#788
fuesseler
closed
2 months ago
8
Restricting introns to RNA seq support
#787
allind
opened
3 months ago
1
BRAKER with bam files and external proteins
#786
enriquepola1996
opened
3 months ago
2
compleasm_to_hints step failing in each test
#785
Gequris
closed
3 months ago
13
missing BUSCOs in BRAKER
#784
zzbbf123
closed
3 months ago
2
BRAKER singularity image
#783
d6948739
opened
3 months ago
3
BRAKER3 - Finished, with a wierd message
#782
cement-head
closed
3 months ago
5
Long-read protocol with Nanopore RNA-seq data
#781
tinameiring
opened
3 months ago
2
How to set paramaters of braker3 with large genome (~10 Gb) with highly repetitive sequence content and many ultra-long introns?
#780
Lixx1989
opened
3 months ago
3
Gene Prediction Workflow : Utilizing BREAKER3 and Generating Protein Files from GTF Output
#779
mathavanpu
opened
3 months ago
2
Can BRAKER3 delete .sam file when complete samtools sort step?
#778
changchuanjun
opened
3 months ago
5
Can this pipeline distinuish the RNAseq data with the fq.gz formart?
#777
changchuanjun
closed
3 months ago
10
Different outputs from same input data
#776
danielwood1992
closed
2 months ago
2
.gm_key or make_nt_freq_mat.pl error
#775
genesrus
opened
4 months ago
2
BRAKER3
#774
pengyan19
opened
4 months ago
0
remove AUGUSTUS ENV overwrites from Dockerfile
#773
sanjaysrikakulam
closed
4 months ago
0
Augustus config path error: cp: cannot stat '/usr/share/augustus/config//': No such file or directory
#772
sanjaysrikakulam
closed
4 months ago
4
No BUSCO score of BRAKER3 prediction result with protein data only
#771
phhsieh001
opened
4 months ago
2
Error:Not get the final gff3 file
#770
Bank-tidy
opened
4 months ago
2
BRAKER with long read RNA-Seq: which format?
#769
praimondeau
closed
3 months ago
6
Error in file braker.pl at line 5404. Failed to execute gmes_petap.pl
#768
natt1621
opened
4 months ago
1
selectSupportedSubsets.py does not output standard gff?
#767
tallnuttrbgv
closed
4 months ago
2
--UTR=on not working due to java error
#766
LliliansCalvo
closed
4 months ago
2
OrthoDB v11 proteome fasta files not fully compatible with BRAKER3
#765
YanisChrys
closed
4 months ago
4
error message with Braker and gmes_petap.pl
#764
LennWhy
opened
4 months ago
2
Update README.md
#763
KatharinaHoff
closed
4 months ago
0
--softmasking_off
#762
TCHeaven
closed
4 months ago
1
Question regarding augustus.hints.gff
#761
fuesseler
closed
4 months ago
2
Cannot resolve accession ( 404 ) when trying to use local files
#760
simonharnqvist
closed
3 months ago
3
Re-annotate RefSeq genome annotation using Braker3
#759
ARW-UBT
opened
4 months ago
1
compleasm is broken on 18.04 with python 3.69
#758
cement-head
closed
4 months ago
1
braker.codingseq contains coding sequences with introns?
#757
juanjo255
closed
3 months ago
1
ERROR in file /opt/BRAKER/scripts/braker.pl at line 3818
#756
LliliansCalvo
opened
4 months ago
3
Braker3 parameters for non cannonical splice cite
#755
y-yoshioka1109
opened
4 months ago
2
Genemark fails when running RNAseq + Proteing test data
#754
Nautilus96
closed
4 months ago
2
with rnaseq_fq_ids and busco_lineage, compleasm output in wrong dir
#753
jbh-cas
closed
4 months ago
4
Compleasm_to_hints error
#752
SamCT
closed
4 months ago
10
gmst same coords for begin and end for several start or stop codons
#751
jbh-cas
opened
5 months ago
0
Possibly use pasa to update and improve braker3 results?
#750
sunnycqcn
opened
5 months ago
1
Error in braker.pl at line 5473, .gm_key is up to date, but GeneMark-ETP still doesn't work
#749
jkmh2
closed
5 months ago
2
Stuck Augustus etraining by large genome
#748
TkNiw
closed
4 months ago
3
The potential repeat sequences bias of BRAKER3
#747
leon945945
opened
5 months ago
1
brker3 image is missing the #30 bugfix from compleasm
#746
epaule
closed
5 months ago
2
braker3 setup.py not found
#745
MaximePolicarpo
closed
4 months ago
2
GeneMark-ETP stderr output
#744
mengyuan09876
opened
5 months ago
3
Previous
Next