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GargGroup
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BioDivGenomics
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Rename data_type to seq_data_type
#37
junaruga
opened
1 year ago
1
CI: Polish
#36
junaruga
closed
1 year ago
0
Run tests conditionally by Dockstore CLI or cromwell.jar
#35
junaruga
closed
1 year ago
0
Move containers-related targets to the `container/Makefile`.
#34
junaruga
closed
1 year ago
0
Run tests conditionally by Dockstore CLI or Cromwell jar directly.
#33
junaruga
closed
1 year ago
0
test/test.py: Replace the file printing logic with only using Python.
#32
junaruga
closed
1 year ago
0
Generate scaffold input files from the template file.
#31
junaruga
closed
1 year ago
0
Use template file to generate inputs.json files in tests.
#30
junaruga
closed
1 year ago
3
Move Docker container related files to the `container` directory.
#29
junaruga
closed
1 year ago
0
Run tests with more GitHub Actions cases to save running time.
#28
junaruga
closed
1 year ago
1
Organize test data files.
#27
junaruga
closed
1 year ago
0
Use pytest-3 or pytest.
#26
junaruga
closed
1 year ago
0
Add data_type: ONT case.
#25
junaruga
closed
1 year ago
0
Move tests in Makefile to a Python file executed by pytest.
#24
junaruga
closed
1 year ago
0
README.md: Add a link to the wiki page. [ci skip]
#23
junaruga
closed
1 year ago
0
Reduce the CI jobs.
#22
junaruga
closed
1 year ago
0
Add scaffold logic.
#21
junaruga
closed
1 year ago
0
Add a command option to set kmer size: 31.
#20
junaruga
closed
1 year ago
0
Update the test data with larger but better ones.
#19
junaruga
closed
1 year ago
0
Add assembly logic.
#18
junaruga
closed
1 year ago
1
Revert the commits below as the current main doesn't work with unknow…
#17
junaruga
closed
1 year ago
0
Add check_input task to check the input parameters early.
#16
junaruga
closed
1 year ago
0
Add all the estimation logics.
#15
junaruga
closed
1 year ago
0
Run with sub workflow file.
#14
junaruga
closed
1 year ago
0
Add Data Tables file used on Terra. [ci skip]
#13
junaruga
closed
1 year ago
0
WDL: Set workflow output variable.
#12
junaruga
closed
1 year ago
0
Add Make test-containers task.
#11
junaruga
closed
1 year ago
0
Typo: Replace "mergury" with "merqury-fk". [ci skip]
#10
junaruga
closed
1 year ago
0
MERQURY.FK: Add Dockerfile and Makefile.
#9
junaruga
closed
1 year ago
0
Add FASTK README, and update GENESCOPE.FK README. [ci skip]
#8
junaruga
closed
1 year ago
0
GENESCOPE.FK: Add Dockerfile and Makefile.
#7
junaruga
closed
1 year ago
0
Add license as MIT for this repository. [ci skip]
#6
junaruga
closed
1 year ago
0
Add GitHub Actions CI status badge image. [ci skip]
#5
junaruga
closed
1 year ago
0
Add GitHub Actions CI.
#4
junaruga
closed
1 year ago
0
Use FastK Docker container.
#3
junaruga
closed
1 year ago
0
Add initial .dockstore.yml and WDL files.
#2
junaruga
closed
1 year ago
0
FASTK: Add Dockerfile and Makefile for convenience.
#1
junaruga
closed
1 year ago
0