HumanCellAtlas skylab issues

HumanCellAtlas / skylab

Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines

BSD 3-Clause "New" or "Revised" License

47 stars 34 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

[Snyk] Security upgrade setuptools from 40.5.0 to 70.0.0

#373 rhiananthony opened 2 months ago
0
[Snyk] Security upgrade jinja2 from 2.7.3 to 3.1.4

#372 DailyDreaming opened 4 months ago
0
[Snyk] Security upgrade jinja2 from 2.7.3 to 3.1.3

#371 rhiananthony opened 8 months ago
0
[Snyk] Security upgrade numpy from 1.21.3 to 1.22.2

#370 Bento007 opened 1 year ago
0
[Snyk] Security upgrade setuptools from 39.0.1 to 65.5.1

#369 adrazhi opened 1 year ago
0
[Snyk] Security upgrade setuptools from 39.0.1 to 65.5.1

#368 Fab-T opened 1 year ago
0
Bump numpy from 1.18.4 to 1.22.0 in /docker/loom-output

#367 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.11.2 to 1.22.0 in /docker/cellranger

#366 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.11.2 to 1.21.0 in /docker/cellranger

#365 dependabot[bot] closed 2 years ago
1
[Snyk] Security upgrade jinja2 from 2.7.3 to 2.11.3

#364 Bento007 opened 2 years ago
0
[Snyk] Security upgrade jinja2 from 2.7.3 to 2.11.3

#363 snyk-bot opened 2 years ago
0
[Snyk] Security upgrade jinja2 from 2.7.3 to 2.11.3

#362 snyk-bot opened 3 years ago
0
Bump jinja2 from 2.7.3 to 2.11.3 in /docker/cellranger

#361 dependabot[bot] opened 3 years ago
0
version 2.0.0 on terra underestimation in several cells

#360 YOU-k opened 3 years ago
0
[Snyk] Security upgrade jinja2 from 2.7.3 to 2.11.3

#359 DailyDreaming opened 3 years ago
0
increased the HDD to 3500 GB, from 500 GB originally, to speed-up the SplitBamByCellBarcode step

#358 kishorikonwar opened 4 years ago
0
Remove the task DropSeqToolsDigitalExpression in CreateCountMatrix.wd…

#357 sophiacrennan closed 4 years ago
0
Lk ss2 loom

#356 ekiernan closed 4 years ago
0
Lk readme parameters

#355 ekiernan closed 4 years ago
0
Multi sample smart seq2 v2.0.0 terra array inputs

#354 nikellepetrillo closed 4 years ago
0
Update README.md

#353 ekiernan closed 4 years ago
0
changed merged_bam output file name to sample_id.bam

#352 khajoue2 closed 4 years ago
1
Lk remove zarr ss2

#351 ekiernan closed 4 years ago
0
Lk remove zarr readme

#350 ekiernan closed 4 years ago
0
Fk remove zarr ss2 pipeline GL-1007

#349 khajoue2 closed 4 years ago
0
Fk remove zarr emptydrops snrna GL-1008

#348 khajoue2 closed 4 years ago
1
Lk snap atac readme

#347 ekiernan closed 4 years ago
0
Remove Zarr from ss2 and optimus pipeline GL-1008

#346 khajoue2 closed 4 years ago
0
Lk optimus loom mito

#345 ekiernan closed 4 years ago
0
Lk optimus readme emptydrops

#344 ekiernan closed 4 years ago
0
removes the emptydrop results from Optimus in sn_rna mode

#343 kishorikonwar closed 4 years ago
2
GL-990 Check the file name for SS2 single end, rename if needed

#342 jessicaway closed 4 years ago
0
Lk ss2 readme

#341 ekiernan closed 4 years ago
0
Gl-922 renamed "estimated" count to "expected" count

#340 nikellepetrillo closed 4 years ago
0
Update README.md

#339 ekiernan closed 4 years ago
0
upated the mouse bam hash, gene metric hash, cell metric hash

#338 kishorikonwar closed 4 years ago
1
Kmk mt metric

#337 kishorikonwar closed 4 years ago
1
GL-992 adding counts to ss2 multisample zarr

#336 nikellepetrillo closed 4 years ago
0
Lk optimus readme

#335 ekiernan closed 4 years ago
0
GL-984 adding counts to ss2 zarr

#334 nikellepetrillo closed 4 years ago
0
Lk ss2 json

#333 ekiernan closed 4 years ago
0
fix mouse v2 example

#332 barkasn closed 4 years ago
0
Fix 4k PBMC Manual test

#331 barkasn closed 4 years ago
0
Lk sn rna json

#330 ekiernan closed 4 years ago
0
Update Optimus.changelog.md

#329 ekiernan opened 4 years ago
0
Lk optimus json update

#328 ekiernan closed 4 years ago
1
Input array of read1 and read2 instead of assuming a particular file naming scheme

#327 joshua-gould closed 4 years ago
1
Lk sn rn aseq loom zarr

#326 ekiernan closed 4 years ago
0
Update README.md

#325 barkasn closed 4 years ago
0
Fk gl 839

#324 khajoue2 closed 4 years ago
0