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IKIM-Essen
/
uncovar
Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.
https://ikim-essen.github.io/uncovar
BSD 2-Clause "Simplified" License
21
stars
8
forks
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build: update Pangolin to
#683
github-actions[bot]
opened
12 hours ago
0
chore(deps): bump super-linter/super-linter from 7.1.0 to 7.2.0
#682
dependabot[bot]
opened
2 weeks ago
0
fix: update varlociraptor to 8.4.11
#681
johanneskoester
opened
3 weeks ago
0
Ragtag fails randomly
#680
johanneskoester
opened
3 weeks ago
0
build: update Pangolin to 4.3.1
#679
github-actions[bot]
opened
3 weeks ago
0
chore(master): release 1.1.2
#678
github-actions[bot]
opened
3 weeks ago
0
fix: properly write to log file in order_contigs rule
#677
johanneskoester
closed
3 weeks ago
0
build: update Pangolin to 4.3.1
#676
github-actions[bot]
closed
3 weeks ago
1
fix: update pangolin to 4.3.1
#675
johanneskoester
closed
3 weeks ago
0
chore(master): release 1.1.1
#674
github-actions[bot]
closed
4 weeks ago
1
fix: fix file not found error on shared fs storage
#673
huzuner
closed
4 weeks ago
0
chore(deps): bump super-linter/super-linter from 6.7.0 to 7.1.0
#672
dependabot[bot]
closed
1 month ago
0
fix: fix log not being found by the system
#671
huzuner
closed
1 month ago
0
keep until https://github.com/bioconda/bioconda-recipes/pull/42192 and we can pin to 4.3.1 above...
#670
github-actions[bot]
opened
1 month ago
0
fix: update spades version
#669
alethomas
closed
1 month ago
0
chore: checkout full history for formatting
#668
johanneskoester
closed
1 month ago
8
fix: Revert "feat: FLiRT Mutations column (#664)"
#667
vBassewitz
closed
2 months ago
0
chore(deps): bump peter-evans/create-pull-request from 6 to 7
#666
dependabot[bot]
closed
1 month ago
0
fix: move primer file location under workflow; this avoids file not being found in shared filesystems
#665
huzuner
closed
1 month ago
8
feat: FLiRT Mutations column
#664
alethomas
closed
3 months ago
0
feat: ONT sample preprocessing
#663
vBassewitz
opened
3 months ago
0
fix: pangolin data updates
#662
alethomas
closed
3 months ago
0
fix: pangolin data
#661
alethomas
closed
3 months ago
0
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.7.0
#660
dependabot[bot]
closed
1 month ago
2
chore(deps): bump alstr/todo-to-issue-action from 4.13 to 5
#659
dependabot[bot]
closed
4 months ago
0
chore(deps): bump docker/build-push-action from 5 to 6
#658
dependabot[bot]
closed
4 months ago
0
chore(master): release 1.1.0
#657
github-actions[bot]
closed
1 month ago
1
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.6.0
#656
dependabot[bot]
closed
4 months ago
1
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.5.1
#655
dependabot[bot]
closed
6 months ago
1
feat: add Illumina se as technology
#654
alethomas
opened
6 months ago
0
refactor: include advanced execution
#653
alethomas
opened
6 months ago
0
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.5.0
#652
dependabot[bot]
closed
6 months ago
1
refactor: update README.md with GitHub pages link
#651
alethomas
closed
6 months ago
0
fix: changed kraken input files for ont
#650
vBassewitz
closed
5 months ago
0
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.4.1
#649
dependabot[bot]
closed
6 months ago
1
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.4.0
#648
dependabot[bot]
closed
7 months ago
1
fix: exclude files from auto copyright action
#647
alethomas
closed
7 months ago
0
fix: calculation in overview table
#646
alethomas
closed
7 months ago
0
refactor: update wrappers
#645
alethomas
closed
7 months ago
0
fix: ont primer clipping
#644
alethomas
closed
7 months ago
0
chore: release 1.0.0
#643
alethomas
closed
7 months ago
0
chore: release 1.0.0
#642
alethomas
closed
7 months ago
0
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.3.1
#641
dependabot[bot]
closed
7 months ago
3
chore(deps): bump alstr/todo-to-issue-action from 4.12 to 4.13
#640
dependabot[bot]
closed
7 months ago
0
refactor: docs
#639
alethomas
closed
7 months ago
1
fix: Revert "remove Snakemake environment from report rule"
#638
alethomas
closed
9 months ago
0
fix: remove Snakemake environment from report rule
#637
alethomas
closed
9 months ago
0
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.3.0
#636
dependabot[bot]
closed
8 months ago
1
fix: docs deployment
#635
alethomas
closed
9 months ago
0
fix: pin to varlociraptor 8.4.4
#634
johanneskoester
closed
9 months ago
0
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