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IKIM-Essen
/
uncovar
Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.
https://ikim-essen.github.io/uncovar
BSD 2-Clause "Simplified" License
20
stars
6
forks
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chore(deps): bump super-linter/super-linter from 5.7.2 to 6.7.0
#660
dependabot[bot]
opened
1 week ago
0
chore(deps): bump alstr/todo-to-issue-action from 4.13 to 5
#659
dependabot[bot]
opened
2 weeks ago
0
chore(deps): bump docker/build-push-action from 5 to 6
#658
dependabot[bot]
opened
1 month ago
0
chore(master): release 1.0.1
#657
github-actions[bot]
opened
1 month ago
0
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.6.0
#656
dependabot[bot]
closed
1 week ago
1
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.5.1
#655
dependabot[bot]
closed
1 month ago
1
feat: add Illumina se as technology
#654
alethomas
opened
2 months ago
0
refactor: include advanced execution
#653
alethomas
opened
2 months ago
0
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.5.0
#652
dependabot[bot]
closed
1 month ago
1
refactor: update README.md with GitHub pages link
#651
alethomas
closed
1 month ago
0
fix: changed kraken input files for ont
#650
vBassewitz
closed
1 month ago
0
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.4.1
#649
dependabot[bot]
closed
2 months ago
1
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.4.0
#648
dependabot[bot]
closed
2 months ago
1
fix: exclude files from auto copyright action
#647
alethomas
closed
3 months ago
0
fix: calculation in overview table
#646
alethomas
closed
3 months ago
0
refactor: update wrappers
#645
alethomas
closed
3 months ago
0
fix: ont primer clipping
#644
alethomas
closed
3 months ago
0
chore: release 1.0.0
#643
alethomas
closed
3 months ago
0
chore: release 1.0.0
#642
alethomas
closed
3 months ago
0
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.3.1
#641
dependabot[bot]
closed
3 months ago
3
chore(deps): bump alstr/todo-to-issue-action from 4.12 to 4.13
#640
dependabot[bot]
closed
3 months ago
0
refactor: docs
#639
alethomas
closed
3 months ago
1
fix: Revert "remove Snakemake environment from report rule"
#638
alethomas
closed
4 months ago
0
fix: remove Snakemake environment from report rule
#637
alethomas
closed
4 months ago
0
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.3.0
#636
dependabot[bot]
closed
3 months ago
1
fix: docs deployment
#635
alethomas
closed
4 months ago
0
fix: pin to varlociraptor 8.4.4
#634
johanneskoester
closed
4 months ago
0
fix: Revert "docs: cleanup of documentation"
#633
alethomas
closed
4 months ago
0
chore(deps): bump jlumbroso/free-disk-space from 1.3.0 to 1.3.1
#632
dependabot[bot]
closed
3 months ago
0
fix: pipe of stdout
#631
alethomas
closed
4 months ago
0
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.2.0
#630
dependabot[bot]
closed
4 months ago
1
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.1.1
#629
dependabot[bot]
closed
4 months ago
1
chore(deps): bump super-linter/super-linter from 5.7.2 to 6.0.0
#628
dependabot[bot]
closed
5 months ago
1
chore(deps): bump peter-evans/create-pull-request from 5 to 6
#627
dependabot[bot]
closed
4 months ago
0
fix: update link for covariants
#626
alethomas
closed
5 months ago
0
fix: zipped fastqs for kraken
#625
alethomas
closed
5 months ago
0
fix: remove -r flag
#624
alethomas
closed
6 months ago
2
chore(deps): bump alstr/todo-to-issue-action from 4.11 to 4.12
#623
dependabot[bot]
closed
5 months ago
0
refactor: Update README.md
#622
folker
closed
6 months ago
0
docs: cleanup of documentation
#621
folker
closed
4 months ago
0
refactor: update README.md
#620
alethomas
closed
6 months ago
0
chore(deps): bump actions/upload-artifact from 3 to 4
#619
dependabot[bot]
closed
3 months ago
0
chore(deps): bump actions/setup-python from 4 to 5
#618
dependabot[bot]
closed
3 months ago
0
chore(deps): bump google-github-actions/release-please-action from 3 to 4
#617
dependabot[bot]
closed
3 months ago
0
chore(deps): bump conda-incubator/setup-miniconda from 2 to 3
#616
dependabot[bot]
closed
5 months ago
0
chore(master): release 1.0.0
#615
github-actions[bot]
closed
3 months ago
1
feat: Update README.md for dark/light theme
#614
alethomas
closed
8 months ago
0
fix: QA genome generation
#613
alethomas
closed
8 months ago
0
feat: amplicon utils
#612
alethomas
opened
8 months ago
0
build: update Pangolin to 4.3
#611
github-actions[bot]
closed
8 months ago
0
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