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JULIELab
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gepi
GePI (GEne - Protein Interactions) is a web portal for quick and convenient access to gene - protein interaction mentions automatically extracted from the biomedical literature, i.e. PubMed and PubMed Central (Open Access Subset).
GNU General Public License v3.0
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Offer option to resolve from complex subunits to their complex(es)
#231
khituras
opened
1 year ago
0
Offer option to not do inference from families/groups to their members
#230
khituras
opened
1 year ago
0
Account for hierarchical concept structures when sorting arguments
#229
khituras
opened
1 year ago
0
Issue/226
#228
khituras
closed
1 year ago
0
Investigate AKT search behavior
#227
khituras
closed
1 year ago
1
Replace retrieval of all event documents with aggregations
#226
khituras
closed
1 year ago
0
Update concept manager for gene ontology correction
#225
khituras
closed
1 year ago
0
Add an FAQ page.
#224
khituras
closed
1 year ago
0
Fix NPE when entering the page via FAQ or Help page
#223
khituras
closed
1 year ago
0
Update argument1 and argument2 index fields with FamPlex, HGNC and equal name aggregate IDs
#222
khituras
closed
1 year ago
1
Fix #220.
#221
khituras
closed
1 year ago
0
Fix download file issue "file not found" in production container
#220
khituras
closed
1 year ago
0
Update changelog.
#219
khituras
closed
1 year ago
0
Download link
#218
khituras
closed
1 year ago
0
Fix download button on the new ResultDownload page
#217
khituras
closed
1 year ago
0
Make the dataSessionId random
#216
khituras
opened
1 year ago
0
Fix truncated download table due to event download restriction for charts
#215
khituras
closed
1 year ago
0
Create a (fav)icon or our own
#214
khituras
closed
1 year ago
2
Offer a page for delayed results download
#213
khituras
closed
1 year ago
0
Add a service to delete temporary Excel download files after a given amount of time
#212
khituras
closed
1 year ago
0
Offer possibility to specify number of table rows
#211
khituras
opened
1 year ago
0
Offer full-screen table
#210
khituras
opened
1 year ago
0
Version 0.11.2. Fixes #207,#208.
#209
khituras
closed
1 year ago
0
(re)add fields for ES aggregations to index
#208
khituras
closed
1 year ago
0
Add an input field to allow the user the specification of the number of interactions used for aggregations
#207
khituras
closed
1 year ago
0
Interactive help
#206
khituras
closed
1 year ago
0
Restrict Pie and bar charts to interaction partners actually on the list
#205
khituras
closed
1 week ago
1
Show highlighted section heading on section heading filter
#204
khituras
opened
1 year ago
0
Use tab-persistence to open filter example searches on the help page
#203
khituras
opened
1 year ago
0
Assign all persistend fields the tab persistence strategy
#202
khituras
opened
1 year ago
0
Fix #200, the pure section heading search crash.
#201
khituras
closed
1 year ago
0
Fix crash when doing pure section heading search
#200
khituras
closed
1 year ago
0
Display fulltext match type in Excel
#199
khituras
closed
1 week ago
1
Discard mock arguments from B-list charts
#198
khituras
opened
1 year ago
0
Update to ElasticSearch 7.17.8.
#197
khituras
closed
1 year ago
0
Provide search examples
#196
khituras
closed
1 year ago
0
Re-render charts on resize
#195
khituras
opened
1 year ago
0
Take care to avoid AGGREGATE_EQUAL_NAMES nodes when fetching geneInfo
#194
khituras
closed
1 year ago
0
Introduce separate waiting-for-data state for paged requests
#193
khituras
closed
1 year ago
0
Load geneInfo in batch instead of one-by-one
#192
khituras
closed
1 year ago
0
Add a mechanism for GePiFamplexIdAssigner to let GNP decide whether a gene should be mapped to Famplex/HGNC groups or not
#191
khituras
closed
1 year ago
0
Switch FamPlex and HGNC IDs in the index from conceptIds to prefixed original IDs
#190
khituras
closed
1 year ago
0
Check that events in section headings can be found
#189
khituras
opened
1 year ago
0
Extend preferredName normalization to punctuation and white spaces
#188
khituras
closed
1 year ago
0
Integrate GO -> gene mapping
#187
khituras
closed
1 year ago
0
Integrate HGNC -> gene ID mapping
#186
khituras
closed
1 year ago
0
Add taxIds to index documents and filter on those
#185
khituras
closed
1 year ago
0
Show message when concrete gene IDs and tax IDs are given with contradictions
#184
khituras
closed
1 year ago
1
Check how large result sets may be
#183
khituras
opened
1 year ago
1
Make direct links possible
#182
khituras
closed
1 year ago
1
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