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LiuzLab
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AI_MARRVEL
AI-MARRVEL (AIM) is an AI system for rare genetic disorder diagnosis
GNU General Public License v3.0
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[WIP] Create module 3 and split into smaller pieces
#44
jylee-bcm
closed
1 month ago
3
update bcf_tools version from v1.9 to v1.20.
#43
ZaahidShaik
closed
1 month ago
1
Add Exonic Filters in Proc.sh
#42
jylee-bcm
closed
1 month ago
1
Merge AIM fix to the trio_docker
#41
SpicyChicken6
closed
2 months ago
0
Fixed imputation error from a wrong commit
#40
ChaozhongLiu
closed
2 months ago
0
Update VarTierDiseaseDBFalse.R
#39
hyunhwan-bcm
closed
1 month ago
2
Unfinished HG38 for main branch
#38
jylee-bcm
closed
2 months ago
0
Update VarTierDiseaseDBFalse.R
#37
hyunhwan-bcm
closed
1 month ago
0
Potential bug due to the old version of bcftools
#36
jylee-bcm
closed
2 months ago
1
remove `dplyr` in `Dockerfile`
#35
hyunhwan-bcm
closed
1 month ago
0
Filter VCFs to Exonic Regions Only in Preprocessing Steps
#34
jylee-bcm
closed
2 months ago
1
Refactor prediction step to eliminate multiprocessing
#33
jylee-bcm
closed
1 month ago
1
Handle MT values as NaN to avoid string comparison
#32
jylee-bcm
closed
1 month ago
1
Optimize mod5 diffusion
#31
jylee-bcm
closed
1 month ago
0
Updated AI-MARVEL manuscript link in README and Docs
#30
ChaozhongLiu
closed
3 months ago
0
Feature(ci): Add GitHub Actions for automated testing
#29
arine
closed
3 months ago
0
fix Dockerfile for R installation.
#28
hyunhwan-bcm
closed
3 months ago
0
remove bcftools/bedtools installation in installation.rst
#27
hyunhwan-bcm
closed
3 months ago
0
edit dockerfile for automatical bedtools/bcftools installation.
#26
hyunhwan-bcm
closed
3 months ago
4
Simplify Installation: Add downloading bcftools/bedtools to Dockerfile
#25
arine
closed
1 week ago
0
Add handling when no variants remained
#24
hyunhwan-bcm
closed
1 month ago
0
Question about VarTierDiseaseDBFalse.R
#23
hyunhwan-bcm
closed
2 months ago
0
Add error handling and output.json for proc.sh
#22
jylee-bcm
closed
3 months ago
1
VCF preprocessing requires too strict format
#21
arine
closed
1 week ago
2
Error when running with hg38/GRCh38 samples
#20
yaseminbridges
closed
3 months ago
1
Error when all variants get filtered from gnomAD blacklist / empty VCF is given
#19
arine
closed
1 week ago
2
Nextflow conversion
#18
hyunhwan-bcm
closed
2 months ago
4
Update generate_bivar_data.py
#17
hyunhwan-bcm
closed
1 month ago
1
AIM-NDG
#16
drmurdock
closed
3 months ago
1
Add sorting to unsorted vcf files.
#15
ZaahidShaik
closed
1 month ago
1
rebase commit fiillna_bug
#14
ZaahidShaik
closed
4 months ago
0
Update output.rst
#13
hyunhwan-bcm
closed
4 months ago
0
switching from globus to s3
#12
sasidharPasupuleti
closed
5 months ago
0
Unable to access Globus data
#11
julesjacobsen
closed
4 months ago
4
Hpo obo
#10
sasidharPasupuleti
closed
5 months ago
0
bug fixed when no recessive variant pair found
#9
ChaozhongLiu
closed
5 months ago
0
added filtering checkpoint
#8
ChaozhongLiu
closed
5 months ago
0
Handle the cases that HGMD rs and gnomAD AF is single float num
#7
arine
closed
5 months ago
0
AIM write-protects all of the files it makes
#6
coledeisseroth
closed
7 months ago
1
Cannot download data dependencies in bulk
#5
coledeisseroth
closed
7 months ago
1
Variant quality filter empties the VCF when users don't provide "PASS" designations
#4
coledeisseroth
closed
5 months ago
1
VCF called by other than DeepVariant produces errors
#3
arine
closed
1 week ago
0
Empty HPO does not generate OMIM phenotype file
#2
arine
closed
7 months ago
1
Add alternative key servers for R
#1
arine
closed
7 months ago
1
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