MD-Anderson-Bioinformatics NGCHM-R issues

MD-Anderson-Bioinformatics / NGCHM-R

An R library for creating Next-Generation Clustered Heat Maps (NG-CHM)

http://bioinformatics.mdanderson.org/main/NG-CHM-V2:Overview

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issues

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Update the toggle icon in the documentation

#62 marohrdanz opened 2 weeks ago
0
NG-CHM on documentation page not building

#61 marohrdanz closed 2 days ago
1
Move code examples to one block

#60 marohrdanz opened 2 weeks ago
0
Include documentation on formatting data

#59 marohrdanz opened 2 weeks ago
1
Remove shaidy server example from package documentation

#58 marohrdanz opened 2 weeks ago
0
Only build documentation website on new release

#57 marohrdanz opened 1 month ago
0
Address warnings in vignettes

#56 marohrdanz opened 1 month ago
0
Run java headless in system2()

#55 marohrdanz closed 1 month ago
0
chmExportToPDF / chmExportToHTML fails on Windows

#54 marohrdanz closed 1 month ago
1
Installation improvements

#53 marohrdanz closed 3 months ago
0
Provide better feedback instead of just stop if missing NGCHMSupportFiles

#52 marohrdanz closed 2 months ago
0
DISPLAY env in R studio

#51 marohrdanz closed 2 months ago
0
Load NGCHMSupportFiles when package loaded

#50 marohrdanz closed 2 months ago
1
Include instructions for installing NGCHMDemoData

#49 marohrdanz closed 2 months ago
0
Add info about NGCHMSupportFiles early in `?NGCHM`

#48 marohrdanz closed 2 months ago
0
Warn user about NGCHMSupportFiles and envs

#47 marohrdanz closed 2 months ago
0
Provide better warnings for missing external programs

#46 marohrdanz closed 2 months ago
0
Update Java requirement to 11

#45 marohrdanz closed 2 months ago
0
Update installation instructions (CRAN)

#44 marohrdanz closed 5 months ago
0
Addressing CRAN reviewer's comments to 1.0.0

#43 marohrdanz closed 5 months ago
0
Pkgdown Updates

#42 marohrdanz closed 7 months ago
0
CRAN submission changes

#41 marohrdanz closed 7 months ago
0
No "centroid linkage" agglomeration method available for hierarchical clustering

#40 monikaramos opened 9 months ago
1
Update Website Build Action

#39 marohrdanz closed 9 months ago
0
Use more precision for toJSON of singleElement

#38 marohrdanz closed 10 months ago
1
How to hide the bar

#37 lh12565 opened 11 months ago
1
Retrieve appropriate versioned files from NG-CHM-Artifacts github repo.

#36 jmelott closed 1 year ago
0
Using standard color names for cuts_color results in broken map

#35 marohrdanz opened 1 year ago
0
Don't send 8-digit hexadecimal codes to ShaidyMapGen

#34 marohrdanz opened 1 year ago
0
For cran

#33 bmbroom closed 1 year ago
5
Is this still an active site? I have question about the command "chmViewer()"

#32 aliciachen06 opened 1 year ago
3
Update error message when Java or other required systems components aren't available on the user's system.

#31 jmelott opened 1 year ago
1
Bad HTML file generated

#30 ChrisWakefield closed 1 year ago
5
Errors in function documentation for chmExportToHTML-method

#29 jmelott opened 2 years ago
0
Problem installing - 404 error

#28 diriano closed 1 year ago
0
Actions bug fix: change order of steps

#27 marohrdanz closed 2 years ago
0
Change 'caption' to 'description'

#26 marohrdanz closed 1 year ago
3
Fix NGCHM breakpoints on pkgdown landing page

#25 marohrdanz closed 2 years ago
1
Update vignettes for BRCA demo data

#24 marohrdanz closed 2 years ago
0
Remove example data

#23 marohrdanz closed 10 months ago
1
Build index.md in GitHub Action

#22 marohrdanz closed 2 years ago
0
Minor documentation changes

#21 marohrdanz closed 2 years ago
0
Address initial issues after pkgdown setup

#20 marohrdanz closed 2 years ago
1
Add vignettes and pkgdown website

#19 marohrdanz closed 2 years ago
1
Review attached spreadsheet of functions and classes to see if there is any code that should be documented and/or exported that isn’t already.

#18 jmelott opened 3 years ago
0
Add support for initial set up of panes and plugin contents. (Dependent on save/restore feature for maps being completed.)

#17 jmelott opened 3 years ago
0
Remove dependency on git executable by using sha-1 in digest R package.

#16 jmelott opened 3 years ago
0
Remove dependencies on outside executables by using ssh R package.

#15 jmelott opened 3 years ago
0
Add exported functions to allow user to set which part of the labels are removed when shortened.

#14 jmelott opened 3 years ago
0
Add exported functions to allow user to set display length of labels for rows and columns.

#13 jmelott opened 3 years ago
0