MEP-LINCS knowledgeportal issues

MEP-LINCS / knowledgeportal

Tracking issues related to https://www.synapse.org/mep_lincs

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MCF10A Universities

#61 markdane opened 4 years ago
2
archive immunoflouresence data

#60 kdaily closed 4 years ago
2
fix level4 synapse lincs on metadata table

#59 danielderrick opened 5 years ago
0
Upload LINCS-styled metadata table for ligands

#58 danielderrick opened 5 years ago
0
add schema docs for file and sample annotations.

#57 kdaily closed 5 years ago
0
github links are broken in provenance

#56 kdaily opened 5 years ago
1
expose sample/specimen level metadata more visibly

#55 kdaily opened 5 years ago
2
define a license for the data

#54 kdaily opened 5 years ago
0
generate schema files for each assay to describe metadata

#53 kdaily opened 5 years ago
3
define all metadata in one place

#52 kdaily opened 5 years ago
1
write a readme for cyclic immunoflourescence

#51 kdaily opened 5 years ago
0
L1000 all in level 5 folder, have level 5 in names, but no level 5 noted for levels

#50 kdaily closed 5 years ago
1
this is not a csv

#49 kdaily closed 5 years ago
2
RPPA metadata needs a data dictionary

#48 kdaily opened 5 years ago
1
decide on leveling scheme

#47 kdaily opened 5 years ago
6
annotate RNAseq files using info from file names

#46 kdaily opened 5 years ago
4
create a data freeze

#45 kdaily opened 5 years ago
0
add provenance for ATACseq

#44 kdaily opened 5 years ago
1
change 'dense cube' title and naming to 'molecular deep dive'

#43 kdaily closed 5 years ago
1
convert wikis to readme files and use file preview

#42 kdaily closed 4 years ago
1
what is 'GCP'?

#41 kdaily closed 5 years ago
1
what is 'cyIF'?

#40 kdaily closed 5 years ago
0
reorg kallisto results

#39 kdaily opened 5 years ago
2
annotations to separate metadata, reports, data files

#38 kdaily opened 5 years ago
0
where is RNASeq raw data?

#37 kdaily closed 5 years ago
6
make data appropriate for a data release

#36 kdaily closed 4 years ago
0
make a data index

#35 kdaily closed 5 years ago
2
make RPPA readme more readable

#34 kdaily closed 5 years ago
0
custom R script link doesn't go to code

#33 kdaily opened 5 years ago
2
apply annotations to data files

#32 kdaily opened 5 years ago
1
make mulitsheet excel files easier to use

#31 kdaily closed 5 years ago
1
metadata called 'example' metadata for rnaseq

#30 kdaily closed 5 years ago
1
ATACseq has data in top level bam folder and in data folder

#29 kdaily closed 5 years ago
1
readme for ATACSeq doesn't match wiki

#28 kdaily closed 5 years ago
1
move google sheet of metadata to Synapse table

#27 kdaily opened 5 years ago
1
make images wiki attachments instead of Synapse files

#26 kdaily closed 4 years ago
0
add team to get updates to page

#25 kdaily opened 6 years ago
1
add a news page

#24 kdaily closed 5 years ago
0
add a publications list

#23 kdaily opened 6 years ago
0
make a communications plan

#22 kdaily closed 4 years ago
0
review team members

#21 kdaily closed 5 years ago
1
get publication up

#20 kdaily closed 6 years ago
1
can we deprecate and remove 'Compartment' annotation in favor or 'Location'?

#19 kdaily opened 6 years ago
1
other results to Synapse

#18 kdaily closed 4 years ago
0
consider more verbose names for annotating QA reports

#17 kdaily opened 6 years ago
0
update instructions to use synapser

#16 kdaily closed 4 years ago
0
MD andersen link is dead

#15 kdaily closed 6 years ago
1
mep data explorer uses data from Nov 2016 release

#14 kdaily opened 6 years ago
4
Improve documentation for cell line dashboards

#13 kdaily opened 6 years ago
0
qa and analysis reports are too heavy - slow loading

#12 kdaily closed 5 years ago
7