MPIIComputationalEpigenetics DeepBlue issues

MPIIComputationalEpigenetics / DeepBlue

DeepBlue Epigenomic Data Server

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Automated usage statistics for privileged users

#169 karl616 opened 6 years ago
0
Include mouse data from chip-atlas

#168 felipealbrecht opened 6 years ago
0
Import new chip-atlas data

#167 felipealbrecht opened 6 years ago
0
enhance 'input_regions'

#166 felipealbrecht closed 6 years ago
1
expression_select accept gene_names with version

#165 felipealbrecht opened 6 years ago
0
Check if sample_id is valid in the list_expressions command

#164 felipealbrecht opened 6 years ago
0
use genome version with gene at @SEQUENCE metafield

#163 felipealbrecht opened 6 years ago
0
Check why request r825879 is failing

#162 felipealbrecht opened 6 years ago
0
problem when getting @GENE_NAME with negative strand

#161 felipealbrecht opened 7 years ago
0
include @metacolumsn in the list_column_types

#160 felipealbrecht opened 7 years ago
0
Taxonomic id of each genome

#159 jmfernandez closed 7 years ago
1
Mouse gene models

#158 jmfernandez closed 7 years ago
2
check memory consumption when building the output string

#157 felipealbrecht closed 7 years ago
1
Replace count by findOne in all helper::check_exist()

#156 felipealbrecht closed 7 years ago
1
check why gencode v23 is not display in the data table

#155 felipealbrecht opened 7 years ago
0
Every region should have a genome assigned to it

#154 demuellae closed 7 years ago
0
Changing gene_expressions commands to expressions commands.

#153 felipealbrecht closed 7 years ago
0
rename [list/select]_gene_expressions to [list/select]_expressions

#152 felipealbrecht closed 7 years ago
0
select_genes and list_genes should match gene names exactly

#151 mlist closed 7 years ago
1
create indexes for accessing the genes by genomic location

#150 felipealbrecht closed 7 years ago
0
optimize @GENE_NAME

#149 felipealbrecht closed 7 years ago
0
Implement requests garbage collector

#148 felipealbrecht closed 7 years ago
1
Experiments set

#147 felipealbrecht closed 8 years ago
0
Gene expression parsers

#146 felipealbrecht closed 8 years ago
0
Gene expression parsers

#145 felipealbrecht closed 8 years ago
0
fix documentation of select_gene_expressions

#144 mlist closed 7 years ago
0
get expressions is not returning any results

#143 mlist closed 8 years ago
13
issue with list_genes function.

#142 felipealbrecht closed 8 years ago
0
Wrong region overlap count

#141 ghost closed 8 years ago
17
datatable command for gene expression

#140 felipealbrecht closed 8 years ago
0
datatable command for gene models

#139 felipealbrecht closed 8 years ago
0
Gene Expression must be member of some project

#138 felipealbrecht closed 8 years ago
0
Gene expression

#137 felipealbrecht closed 8 years ago
0
Filter does not work with string values (unless they are metafields)

#136 felipealbrecht closed 8 years ago
1
info gene_expression

#135 felipealbrecht closed 8 years ago
0
info gene

#134 felipealbrecht closed 8 years ago
0
info gene_models

#133 felipealbrecht closed 8 years ago
0
DEEP (and others) private projects are not being show in the projects datatable

#132 felipealbrecht closed 8 years ago
1
@COUNT.* are too slow.

#131 felipealbrecht closed 7 years ago
0
Methylation call data type

#130 demuellae closed 8 years ago
2
Extract NOMe methylation information

#129 demuellae closed 7 years ago
4
DEEP methylation data misannotation

#128 demuellae closed 8 years ago
3
No error message when no experiment is not found (or invalid project) in the collection_experiments_count

#127 felipealbrecht closed 8 years ago
0
Possible bug in the genome normalization in the coverage command

#126 felipealbrecht closed 8 years ago
0
DeepBlue does not check the user before canceling a request

#125 felipealbrecht closed 8 years ago
0
Check the score_matrix for time and memory consumption

#124 felipealbrecht closed 7 years ago
0
as admin: server.add_user_to_project("u33", "DEEP", True, user_key)

#123 felipealbrecht closed 8 years ago
1
server.list_experiments(None, "peaks", "H3K4me3", ["inflammatory macrophage", "macrophage"], None, None, "Q", user_key) ['error', '']

#122 felipealbrecht closed 8 years ago
1
Fixes.

#121 felipealbrecht closed 8 years ago
0
Better commands description

#120 felipealbrecht closed 8 years ago
0