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MarioniLab
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scran
Clone of the Bioconductor repository for the scran package.
https://bioconductor.org/packages/devel/bioc/html/scran.html
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Scran normalisation for Single cell allelic data
#71
DeepshikhaChandel
closed
3 years ago
4
computeSumFactors converts some sparse matrices to dense
#70
scottgigante
opened
3 years ago
5
coef and contrast arguments to pseudobulkDGE()
#69
enricoferrero
closed
3 years ago
0
Suggestion to `combineVar` function
#68
AndrMenezes
closed
3 years ago
3
Added helper function to compute per-cluster summary statistics.
#67
LTLA
closed
3 years ago
0
Purge all clustering functions that were migrated to bluster.
#66
LTLA
closed
4 years ago
0
Test for semi-label-specific markers in pseudobulk DE.
#65
LTLA
closed
4 years ago
0
support the abstract DelayedArray backend
#64
mikejiang
closed
4 years ago
6
Add a voom + quality weights mode to pseudoBulkDGE.
#63
LTLA
closed
4 years ago
0
scran normalization single cell allele count
#62
Hemantcnaik
closed
4 years ago
4
Error encountered when using convertTo() function to convert SingleCellExperiment object to monocle's CellDataSet object
#61
ntran95
closed
4 years ago
2
Cyclone usage
#60
Nusob888
closed
4 years ago
2
error in running cyclone ()
#59
crebli
closed
4 years ago
9
Silhouette index from bootstrapCluster()
#58
iwillham
closed
4 years ago
8
Returning in findMarkers() the t-statistics (or other pairwise statistics calculated)
#57
lcolladotor
closed
4 years ago
7
Add 'known doublet' mode to doubletCells()
#56
PeteHaitch
closed
4 years ago
3
Comparing modelGeneVar with old function trendVar
#55
funpys
closed
4 years ago
3
Copy-paste typo in modelGeneVarByPoisson docs
#54
PeteHaitch
closed
4 years ago
1
New clusterPurity function for evaluating cluster purity
#53
LTLA
closed
4 years ago
0
Error: Not compatible with requested type: [type=character; target=double].
#52
sarahbashir
closed
4 years ago
0
Add option for tricube doublet kernel
#51
jonathangriffiths
closed
4 years ago
3
findMarkers test.type functionality broke
#50
ONeillMB1
closed
4 years ago
2
Error in "Modeling the technical noise in gene expression" with trendVar()
#49
vyturing
closed
4 years ago
4
Try out the bootstrapping function
#48
LTLA
closed
4 years ago
0
problem about "BOOST_CONSTEXPR" while installing the scran package
#47
ghost
closed
4 years ago
4
FDR values show huge difference between `multiBlockVar()` and `ModelGeneVar()`
#46
ahy1221
closed
4 years ago
4
Add more options for marker discovery
#45
LTLA
closed
4 years ago
0
modelGeneVar function missing
#44
FrancesWong
closed
4 years ago
3
fastMNN correction vector calculation
#43
whitleyo
closed
4 years ago
3
Streamline DE machinery
#42
LTLA
closed
4 years ago
2
Overhaul HVG machinery
#41
LTLA
closed
4 years ago
1
Add type="jaccard" to BuildSNNGraph
#40
lazappi
closed
5 years ago
2
Convenience function for marker selection - unique global markers
#39
robertamezquita
closed
5 years ago
3
NaNs in mnnCorrect output matrix
#38
danshu
closed
4 years ago
3
multiBatchNorm with subset.row
#37
erbader
closed
5 years ago
2
computeSumFactors
#36
s2hui
closed
4 years ago
6
problem with argument "span“ in trendVar function
#35
FTD2018
closed
5 years ago
11
porblem using denoisePCA
#34
antgomo
closed
5 years ago
2
Finding C++ code for cxx_smooth_gaussian_kernel
#33
dylkot
closed
5 years ago
1
Began transition of C++ code to beachmat version 2.
#32
LTLA
closed
5 years ago
0
fastMNN compute.variances
#31
johnmous
closed
5 years ago
2
findMarkers: Error in FUN(...) : class name has no 'package' attribute
#30
tobsecret
closed
4 years ago
5
'clusters' or 'cluster' in computeSumFactor
#29
yicheinchang
closed
5 years ago
2
Exporting the batch corrected data
#28
gouthamatla
closed
5 years ago
4
object ‘normalizeCounts’ is not exported by 'namespace:scater'
#27
DadongZ
closed
5 years ago
2
References to `normalize`
#26
robertamezquita
closed
5 years ago
2
Error in .check_batch_consistency(batches, byrow = TRUE) : number of rows is not the same across batches
#25
liuyongcds
closed
5 years ago
2
Impossible to use list of matrices as mnnCorrect input
#24
u9090
closed
5 years ago
1
object ‘areSizeFactorsCentred’ is not exported by 'namespace:scater'
#23
liuyongcds
closed
5 years ago
2
doubletCluster error: invalid rownames length
#22
danshu
closed
5 years ago
4
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