NCI-CCDI CCDITEGS_Bioinformatics issues

NCI-CCDI / CCDITEGS_Bioinformatics

This is an internal repository to track tasks on Project boards as issues

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TEGS4_Integrate results with Phosphoproteomics data

#45 Krithika-Bhuvan opened 11 months ago
0
TEGS8_Download data, Perform QC on the data

#44 Krithika-Bhuvan opened 11 months ago
0
CCDI4_Benchmarking of the sc multi ome pipeline

#43 Krithika-Bhuvan opened 11 months ago
0
CCDI4_Package the R scripts into a snakemake pipeline for multi-ome single celll seq

#42 Krithika-Bhuvan opened 11 months ago
0
CCDI4_Create a test workflow in R based on Seurat5 for sc multi-ome pipeline

#41 Krithika-Bhuvan opened 11 months ago
0
CCDI2_Do a test merge of duplicate files across multiple lanes

#40 Krithika-Bhuvan opened 11 months ago
1
TEGS9_Generate Globus link to share with Jack's Collaborator

#39 wuy24 opened 11 months ago
0
TEGS9_Download HiC data using the link from Sequencing core

#38 wuy24 opened 11 months ago
0
TEGS6_office hours

#37 Krithika-Bhuvan opened 11 months ago
0
TEGS8_Perform RNA-seq analysis on iDEP

#36 Krithika-Bhuvan opened 11 months ago
2
TEGS5_Perform RNA-seq analysis

#35 Krithika-Bhuvan opened 11 months ago
2
TEGS4_Test ATAC seq pipeline

#34 Krithika-Bhuvan opened 11 months ago
1
TEGS4_Additional analysis on RNA-seq data (i.e. RNA-seq part 2)

#33 Krithika-Bhuvan opened 11 months ago
1
CCDI4_Draft the internal meeting note for the project

#32 wuy24 opened 11 months ago
0
TEGS7_Use GSEApy to Generate Drug target enrichment analysis plot for DHFR inhibitor and DHFR degrader

#31 wuy24 opened 11 months ago
1
TEGS4_Run a custom GSEA on the FOXO PAX3 gene sets shared by Jack

#30 Krithika-Bhuvan opened 11 months ago
0
TEGS1_DEG and enrichment analysis with FC >1.5 FDR>0.1

#29 wuy24 opened 12 months ago
0
TEGS7_Work on r script for generating drug target enrichment analysis figure

#28 wuy24 opened 12 months ago
1
TEGS3_Prepare Meeting note for meet with George to discuss the labelling issue and upload slides to AMP

#27 wuy24 opened 12 months ago
0
CCDI2_Get Help to move data from network shared drive to HPC DME

#26 Krithika-Bhuvan opened 12 months ago
1
Ying bethesda parking permit

#25 pajailwala opened 12 months ago
1
TEGS3_Build reference by adding the new GFP sequences and check which samples have high GFP expression.

#24 wuy24 opened 1 year ago
0
Review HPCDME documentation

#23 pajailwala opened 1 year ago
0
Complete HPCDME setup based on instructions shared on Teams

#22 pajailwala opened 1 year ago
0
TEGS4_Perform secondary analysis on RNA-seq data - Part 1

#21 Krithika-Bhuvan opened 1 year ago
0
TEGS4_Run Pipeline on ATAC-seq data

#20 Krithika-Bhuvan opened 1 year ago
0
TEGS4_Integrate RNAseq and ATACseq

#19 Krithika-Bhuvan opened 1 year ago
0
CCDI2_Meet with National CCDI Team\

#18 Krithika-Bhuvan opened 1 year ago
1
CCDI2_Neeraja to share list of fields to be tracked in the POBCCDI Workflow tracking AMP system

#17 Krithika-Bhuvan opened 1 year ago
0
CCDI2_Schedule meeting with Mike Kelly

#16 Krithika-Bhuvan opened 1 year ago
0
TEGS4_Test RENEE pipeline on test samples, re-run on TEGS4 data

#15 Krithika-Bhuvan opened 1 year ago
2
TEGS3_Check the sample name issue

#14 wuy24 opened 1 year ago
0
TEGS2_Follow up with PI for the introductory meeting again

#13 wuy24 opened 1 year ago
0
TEGS3_Connect with Des at the Genomics Core to learn about about their sequencing workflows

#12 Krithika-Bhuvan opened 1 year ago
2
Migrate github org account to CBIIT enterprise

#11 pajailwala opened 1 year ago
0
Remind Jack to accept github member invites

#10 pajailwala opened 1 year ago
1
CCDI4_Execute the built pipeline on Single cell Multiome analysis of Thyroid samples

#9 pajailwala opened 1 year ago
2
TEGS2_Resolving Neuroblastoma tumor heterogeneity and phenotypic switching

#8 pajailwala opened 1 year ago
0
NCI-CCDI Github Org account: members

#7 pajailwala opened 1 year ago
1
CCDI2_ Draft workflow diagram

#6 pajailwala opened 1 year ago
1
New AMP group POBCCDI

#5 pajailwala opened 1 year ago
1
TEGS4_Run RENEE and QC

#4 pajailwala opened 1 year ago
1
TEGS3_rebuild reference genome by adding GFP sequences to check reads mapped to GFP

#3 pajailwala opened 1 year ago
2
TEGS1_Upload result files to AMP and schedule meeting with the PI

#2 pajailwala opened 1 year ago
0
CCDI3_CCDI website

#1 pajailwala opened 1 year ago
0