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NorwegianVeterinaryInstitute
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DemultiplexRawSequenceData
A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
GNU General Public License v3.0
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feature request: Ensure that /usr/bin/java exists before starting execution
#31
georgemarselis-nvi
closed
1 year ago
1
feature request: Ensure that all steps have been executed
#30
georgemarselis-nvi
opened
1 year ago
2
demultiplex_script.py can be only invoked by sambauser01 user
#29
arvindsundaram
closed
1 year ago
1
feature request: configuration file for the script
#28
georgemarselis-nvi
opened
1 year ago
0
feature request: Deliver to VIGASP
#27
georgemarselis-nvi
opened
1 year ago
1
feature request: Deliver to NIRD
#26
georgemarselis-nvi
opened
1 year ago
5
Check if tar files can be unpacked correctly and with no errors
#25
georgemarselis-nvi
closed
1 year ago
10
feature request: Email notifications
#24
georgemarselis-nvi
opened
1 year ago
3
feature request: If the SampleSheet has changed, archive the old demux directory and tar files and then demultiplex the run again
#23
georgemarselis-nvi
opened
1 year ago
6
feature request: Check if demux script has been invoked more than one time
#22
georgemarselis-nvi
opened
1 year ago
2
feature request: SampleSheet.csv validation
#21
georgemarselis-nvi
opened
1 year ago
1
feature request: Turn demux script into an object
#20
georgemarselis-nvi
opened
1 year ago
5
feature request: Add command-line arguments to demultiplex_script.py
#19
georgemarselis-nvi
opened
1 year ago
2
feature request: Detect if the same run has been offered for demultiplexing, notify if stuck
#18
georgemarselis-nvi
opened
1 year ago
1
feature request: Turn script into a daemon
#17
georgemarselis-nvi
opened
1 year ago
0
feature request: logging
#16
georgemarselis-nvi
closed
1 year ago
9
Update README.md
#15
arvindsundaram
closed
1 year ago
1
Can fastq.gz files be uploaded into IRIDA, without unzipping? how much additional space do we need? what directory are they being saved to?
#10
ajkarloss
closed
11 months ago
21
Sort out the architecture for the new features for the demultiplexing script and steps (Details in comments)
#13
karinlag
closed
1 year ago
10
Figure out how fields from samplesheet gets connected to sampleids/fastq filenames
#14
karinlag
closed
1 year ago
4
Lane splitting for NextSeq?
#9
ajkarloss
opened
2 years ago
2
Delineate between demultiplexing and delivery scripts
#12
karinlag
closed
1 year ago
5
Modify demultiplexing script to satisfy data delivery requirements
#11
karinlag
closed
1 year ago
3
Move paths to reflect saga?
#8
karinlag
opened
2 years ago
16
Wrong path in "transfer_to_NIRD.md"
#7
magnulei
closed
2 years ago
1
Please update the changelog with new changes
#6
karinlag
closed
2 years ago
4
Chaning paths
#5
arvindsundaram
closed
2 years ago
0
Automatic transfer of data to NIRD
#4
karinlag
closed
4 years ago
6
Naming convention for projects and samples in MiSeq
#3
arvindsundaram
closed
1 year ago
2
Define SOP
#2
arvindsundaram
closed
4 years ago
2
Create demultiplex_script.py
#1
arvindsundaram
closed
4 years ago
0
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