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PMBio
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deeprvat
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Conversion error (df to pq) in merge_annotations
#59
Jonas-B-Frank
closed
3 months ago
2
Str to int conversion for chrX & chrY
#58
Jonas-B-Frank
closed
3 months ago
3
Assertion error in annotations.py
#57
Jonas-B-Frank
closed
3 months ago
0
Update dense_gt.py
#56
HolEv
closed
4 months ago
0
Feature cv training
#55
HolEv
closed
4 months ago
0
Annotations new features
#54
Marcel-Mueck
closed
2 months ago
1
Annotation speedups
#53
Marcel-Mueck
closed
4 months ago
0
Feature regenie
#52
bfclarke
closed
4 months ago
0
Update github actions to node v20
#51
endast
closed
4 months ago
1
Add sample missingness rule to preprocessing pipeline
#50
endast
closed
2 months ago
0
Remove unsused directories in preprocessing pipeline
#49
endast
closed
5 months ago
0
Remove metadata dir from preprocessing pipeline
#48
endast
closed
5 months ago
0
Fix failing snakemake smoke tests
#47
endast
closed
6 months ago
0
Support WGS filtering in the preprocessing pipeline
#46
endast
closed
2 months ago
0
Feature burden sample ids
#45
meyerkm
closed
6 months ago
0
Feature pull request template
#44
endast
closed
6 months ago
0
Feature pull request template
#43
endast
closed
6 months ago
0
Feature: Optimizations and bug fixes for training
#42
bfclarke
closed
6 months ago
0
Feature snakemake modular
#41
meyerkm
closed
6 months ago
0
Preprocessing uppercase fasta file
#40
endast
closed
6 months ago
0
Make the preprocessing less ukbb specific
#39
endast
closed
7 months ago
0
Add Munzlinger to citation
#38
endast
closed
7 months ago
0
Add documentation and docstrings
#37
fmunzlin
closed
7 months ago
0
added documentation and docstrings
#36
fmunzlin
closed
7 months ago
0
Update docstrings for functions
#35
meyerkm
closed
7 months ago
0
Make the preprocessing less UKBB specific
#34
endast
closed
7 months ago
0
Point docs to RTD
#33
endast
closed
7 months ago
0
Update doc links
#32
endast
closed
7 months ago
0
Add read the docs
#31
endast
closed
7 months ago
0
Save chunk shape after dropping duplicates
#30
endast
closed
8 months ago
0
Create CITATION.cff
#29
endast
closed
8 months ago
2
Add DeepRVAT annotation pipeline
#28
endast
closed
8 months ago
0
Feature binary traits
#27
HolEv
closed
8 months ago
0
Feature binary traits
#26
HolEv
closed
9 months ago
0
Update train.py DataLoader
#25
meyerkm
closed
9 months ago
0
Refactor PaddedAnnotations and SparseGenotype
#24
bfclarke
opened
9 months ago
0
aligning file paths of seed gene discovery ouptut and deeprvat input
#23
HolEv
closed
10 months ago
0
Remove sample sorting from preprocessing
#22
endast
closed
10 months ago
0
Support non-numeric sample names
#21
bfclarke
closed
10 months ago
0
Update README.md
#20
Marcel-Mueck
closed
8 months ago
1
Annotations
#19
Marcel-Mueck
closed
8 months ago
0
fix-path-naming
#18
meyerkm
closed
10 months ago
0
Add note on deeprvat environment
#17
endast
closed
11 months ago
0
Deeprvat environment does not support cuda when created using conda
#16
endast
opened
11 months ago
0
Feature add preprocessing unit tests
#15
endast
closed
11 months ago
0
Create autoblack_pull_request github action
#14
endast
closed
11 months ago
0
Cleanup seed gene discovery
#13
endast
closed
11 months ago
0
Refactor preprocessing pipeline and add github action
#12
endast
closed
11 months ago
0
Patch 1
#11
fmunzlin
closed
11 months ago
0
Update models.py
#10
fmunzlin
closed
11 months ago
0
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