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deeprvat
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added possibility to add af frequency from gnomad
#109
Marcel-Mueck
opened
2 weeks ago
0
Bug seed gene pipeline crash
#108
endast
closed
1 month ago
0
Regenerate IDs for VEP annotation inout VCFs
#107
Marcel-Mueck
closed
1 month ago
0
Show the commands that run in pipeline tests
#106
endast
closed
1 month ago
0
changed config to use normalized bcfs as default input.
#105
Marcel-Mueck
closed
1 month ago
0
fix missing variant_file
#104
HolEv
closed
1 month ago
0
Annotations modular
#103
Marcel-Mueck
closed
1 month ago
0
Add support pipeline test extra flags
#102
endast
closed
1 month ago
0
Absplice named env
#101
Marcel-Mueck
closed
1 month ago
0
Post run cmd in pipeline tests
#100
endast
closed
1 month ago
0
Simplify configuration file for running deepRVAT
#99
meyerkm
closed
2 weeks ago
0
Add checks for empty samples and variants
#98
endast
closed
1 month ago
0
Feature/auto rulegraphs in docs
#97
endast
closed
1 month ago
0
Delete ukbiobank.md
#96
endast
closed
1 month ago
0
Fix assert in process_sparse_gt
#95
endast
closed
1 month ago
0
Create author list dynamically in docs
#94
endast
closed
1 month ago
0
Refactor and add test actions
#93
endast
closed
1 month ago
0
bug fixes for REGENIE pipelines
#92
bfclarke
closed
1 month ago
0
Update pre-trained DeepRVAT models
#91
meyerkm
closed
1 month ago
0
Add plof column anno df
#90
Marcel-Mueck
closed
1 month ago
0
Annotation pipelie dynamic inputs
#89
endast
closed
1 month ago
0
Restructure docs
#88
HolEv
closed
1 month ago
0
Add variants chromosomes filtering in preprocessing pipeline
#87
endast
closed
1 month ago
0
Change GitHub action runner to ubuntu-latest
#86
endast
closed
1 month ago
0
Cast sample names to string
#85
meyerkm
closed
1 month ago
0
Fix omitted variants, correct test cases.
#84
Marcel-Mueck
closed
1 month ago
0
Use dynamic paths from rules for preprocessing pipeline
#83
endast
closed
1 month ago
0
Feature/annotation tests
#82
Marcel-Mueck
closed
2 months ago
0
Remove data frame merge on #upload_variation in process_vep
#81
meyerkm
closed
2 months ago
0
Update environment_spliceai_rocksdb.yaml
#80
Marcel-Mueck
closed
2 months ago
0
Revert "Feature streamline cv training"
#79
meyerkm
closed
2 months ago
1
Update linear model
#78
fmunzlin
closed
1 month ago
0
add association_only flag into config rule
#77
meyerkm
closed
1 month ago
1
Failing save_merge in association_dataset in seed gene discovery pipeline
#76
Jonas-B-Frank
opened
2 months ago
31
Update annotation_colnames_filling_values.yaml
#75
Marcel-Mueck
closed
2 months ago
0
Missing columns in final annotations.parquet lead to errors in seed gene pipeline. Failing save_merge.
#74
Jonas-B-Frank
closed
2 months ago
6
Add test data from str samples and speed up tests
#73
endast
closed
1 month ago
0
added resource specifications for mem_mb back into pipelines, removed…
#72
Marcel-Mueck
closed
2 months ago
0
Feature streamline cv training
#71
bfclarke
closed
2 months ago
1
Str sample names in seed gene discovery pipeline leads to errors.
#70
Jonas-B-Frank
closed
1 month ago
0
Variants file not passed to association_dataset in seedgenediscovery pipeline
#69
Jonas-B-Frank
closed
1 month ago
1
Column naming in annotations pipeline
#68
Jonas-B-Frank
closed
2 months ago
7
Doc graphics generation script
#67
endast
closed
2 months ago
0
Cleanup repo
#66
endast
closed
2 months ago
0
Optimize preprocessing
#65
endast
closed
2 months ago
0
fixed bugs in the annotation pipeline based on issues #61, #62 and #63.
#64
Marcel-Mueck
closed
2 months ago
2
Inconsistent columns during concat_annotations
#63
Jonas-B-Frank
closed
2 months ago
1
directory() missing in absplice_download.snakefile in the annotation pipeline
#62
Jonas-B-Frank
closed
2 months ago
1
Version pointer in environment_spliceai_rocksdb.yaml
#61
Jonas-B-Frank
closed
2 months ago
1
Update preprocessing.md
#60
Marcel-Mueck
closed
3 months ago
0
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